Published June 2, 2023
| Version 3.12.0
Software
Open
nf-core/rnaseq: nf-core/rnaseq v3.12.0 - Osmium Octopus
Authors/Creators
- Harshil Patel1
- Phil Ewels2
- Alexander Peltzer3
- Olga Botvinnik4
- Gregor Sturm3
- Denis Moreno5
- Pranathi Vemuri6
- Maxime U Garcia7
- silviamorins8
- Lorena Pantano
- Mahesh Binzer-Panchal9
- nf-core bot
- Robert Syme1
- Matthias Zepper10
- Gavin Kelly11
- Friederike Hanssen12
- James A. Fellows Yates13
- Chris Cheshire14
- rfenouil
- Jose Espinosa-Carrasco15
- marchoeppner
- Edmund Miller
- Adam Talbot2
- Peng Zhou16
- Sarah Guinchard17
- Matthias Hörtenhuber18
- Gisela Gabernet
- Christian Mertes19
- Daniel Straub12
- Paolo Di Tommaso1
- 1. Seqera Labs
- 2. @seqeralabs
- 3. Boehringer Ingelheim
- 4. @BridgeBioAnalytics
- 5. Inivata
- 6. CZ BioHub
- 7. @seqeralabs | Stockholm
- 8. @qbicsoftware
- 9. @NBISweden
- 10. @SciLifeLab
- 11. Francis Crick Institute @crickbabs
- 12. QBiC
- 13. HKI Jena, MPI-EVA Leipzig
- 14. The Francis Crick Institute
- 15. CRG
- 16. @maizeumn
- 17. bilille
- 18. @ScilifelabDataCentre
- 19. TU Munich
Description
[3.12.0] - 2023-06-02
Credits
Special thanks to the following for their contributions to the release:
Thank you to everyone else that has contributed by reporting bugs, enhancements or in any other way, shape or form.
Enhancements & fixes- [#1011] - FastQ files from UMI-tools not being passed to fastp
- [#1018] - Ability to skip both alignment and pseudo-alignment to only run pre-processing QC steps.
- PR #1016 - Updated pipeline template to nf-core/tools 2.8
- PR #1025 - Add
public_aws_ecr.configto source mulled containers when usingpublic.ecr.awsDocker Biocontainer registry - PR #1038 - Updated error log for count values when supplying
--additional_fasta - PR #1042 - revert samtools_sort modules to no memory assignement
| Old parameter | New parameter |
|---|---|
--skip_pseudo_alignment |
Software dependenciesNB: Parameter has been updated if both old and new parameter information is present. NB: Parameter has been added if just the new parameter information is present. NB: Parameter has been removed if new parameter information isn't present.
| Dependency | Old version | New version |
|---|---|---|
fastp |
0.23.2 | 0.23.4 |
samtools |
1.16.1 | 1.17 |
NB: Dependency has been updated if both old and new version information is present.
NB: Dependency has been added if just the new version information is present.
NB: Dependency has been removed if new version information isn't present.
Files
nf-core/rnaseq-3.12.0.zip
Files
(6.0 MB)
| Name | Size | Download all |
|---|---|---|
|
md5:5067508085487e8159de30a3b5fb9922
|
6.0 MB | Preview Download |
Additional details
Related works
- Is supplement to
- https://github.com/nf-core/rnaseq/tree/3.12.0 (URL)