Published June 1, 2023
| Version v0.9.2
Software
Open
cooler
Description
Cooler is a Python support library for .cool files: an efficient storage format for high resolution genomic interaction matrices. The cooler package aims to provide the following functionality: * Build contact matrices at any genomic resolution. * Query contact matrices. * Export and visualize the data. * Perform scalable out-of-core operations on the data. * Provide a clean and well-documented Python API to interact with the data. Follow cooler development on GitHub.
Notes
Please cite this software using the metadata from "preferred-citation".
Files
open2c/cooler-v0.9.2.zip
Files
(11.4 MB)
| Name | Size | Download all |
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md5:0a5e3b549ffa4e45763891fce2f07376
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Additional details
Related works
- Is supplement to
- https://github.com/open2c/cooler/tree/v0.9.2 (URL)