Published May 31, 2023 | Version v1
Dataset Open

A genome-wide genetic screen uncovers novel determinants of human pigmentation

Authors/Creators

  • 1. University of Oklahoma
  • 2. Swigut
  • 3. Mohammad
  • 4. Naqvi
  • 5. Arreola
  • 6. Tycko
  • 7. Kim
  • 8. Pritchard
  • 9. Bassik
  • 10. Wysocka

Description

1717.gwas.imputed_v3.both_sexes.variants.nolowconf.maf01.clumped.txt - GWAS results for LD-clumped genome-wide significant variants from White British skin color GWAS
1717.gwas.imputed_v3.both_sexes.variants.nolowconf.maf01.pbsfilt.100kb.tsv - GWAS results for LD-pruned variants within 100kb of pro-melanin genes
eqtl.gwas.minpergene.txt - melanocyte eQTL and White British skin color GWAS results for SNPs near pro-melanin gene. Columns 1-12 are eQTL info, 13 onwards are GWAS info. Select rows with "closest" = TRUE and both p-values < 0.01 to recreate figure in the paper.
csv_and_r_script_files.tar- csv and R script files to recreate the figures in the paper. 
PBS_Pigmentation.tar- txt and R script files to recreate PBS figures in the Figure 
 

Files

1717.gwas.imputed_v3.both_sexes.variants.nolowconf.maf01.clumped.txt

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