Gene structure prediction results and execution commands and options by GINGER and similar tools
Authors/Creators
Description
Gene structure prediction results and execution commands and options by GINGER and similar tools
# GINGER
## Output files
- GINGER_Caenorhabditis_elegans.gff
- GINGER_Danio_rerio.gff
- GINGER_Drosophila_melanogaster.gff
- GINGER_Homo_sapiens.gff
- GINGER_Oryza_sativa.gff
## Commands
- GINGER_command.txt
## Configuration files (option settings)
- GINGER_nextflow_Caenorhabditis_elegans.config
- GINGER_nextflow_Danio_rerio.config
- GINGER_nextflow_Drosophila_melanogaster.config
- GINGER_nextflow_Homo_sapiens.config
- GINGER_nextflow_Oryza_sativa.config
# EVM
## Output files
- EVM_Caenorhabditis_elegans.gff
- EVM_Danio_rerio.gff
- EVM_Drosophila_melanogaster.gff
- EVM_Homo_sapiens.gff
- EVM_Oryza_sativa.gff
## Commands
- EVM_command.txt
## Configuration files (option settings)
- EVM_weights_Caenorhabditis_elegans.txt
- EVM_weights_Danio_rerio.txt
- EVM_weights_Drosophila_melanogaster.txt
- EVM_weights_Homo_sapiens.txt
- EVM_weights_Oryza_sativa.txt
# MAKER
## Output files
- MAKER_Caenorhabditis_elegans.gff
- MAKER_Danio_rerio.gff
- MAKER_Drosophila_melanogaster.gff
- MAKER_Oryza_sativa.gff
## Commands
- MAKER_command.txt
## configuration files (option settings)
- MAKER_bopts_Caenorhabditis_elegans.ctl
- MAKER_bopts_Danio_rerio.ctl
- MAKER_bopts_Drosophila_melanogaster.ctl
- MAKER_bopts_Oryza_sativa.ctl
- MAKER_evm_Caenorhabditis_elegans.ctl
- MAKER_evm_Danio_rerio.ctl
- MAKER_evm_Drosophila_melanogaster.ctl
- MAKER_evm_Oryza_sativa.ctl
- MAKER_exe_Caenorhabditis_elegans.ctl
- MAKER_exe_Danio_rerio.ctl
- MAKER_exe_Drosophila_melanogaster.ctl
- MAKER_exe_Oryza_sativa.ctl
- MAKER_opts_Caenorhabditis_elegans.ctl
- MAKER_opts_Danio_rerio.ctl
- MAKER_opts_Drosophila_melanogaster.ctl
- MAKER_opts_Oryza_sativa.ctl
# GINGER
## Output files
- GINGER_Caenorhabditis_elegans.gff
- GINGER_Danio_rerio.gff
- GINGER_Drosophila_melanogaster.gff
- GINGER_Homo_sapiens.gff
- GINGER_Oryza_sativa.gff
## Commands
- GINGER_command.txt
## Configuration files (option settings)
- GINGER_nextflow_Caenorhabditis_elegans.config
- GINGER_nextflow_Danio_rerio.config
- GINGER_nextflow_Drosophila_melanogaster.config
- GINGER_nextflow_Homo_sapiens.config
- GINGER_nextflow_Oryza_sativa.config
# EVM
## Output files
- EVM_Caenorhabditis_elegans.gff
- EVM_Danio_rerio.gff
- EVM_Drosophila_melanogaster.gff
- EVM_Homo_sapiens.gff
- EVM_Oryza_sativa.gff
## Commands
- EVM_command.txt
## Configuration files (option settings)
- EVM_weights_Caenorhabditis_elegans.txt
- EVM_weights_Danio_rerio.txt
- EVM_weights_Drosophila_melanogaster.txt
- EVM_weights_Homo_sapiens.txt
- EVM_weights_Oryza_sativa.txt
# MAKER
## Output files
- MAKER_Caenorhabditis_elegans.gff
- MAKER_Danio_rerio.gff
- MAKER_Drosophila_melanogaster.gff
- MAKER_Oryza_sativa.gff
## Commands
- MAKER_command.txt
## configuration files (option settings)
- MAKER_bopts_Caenorhabditis_elegans.ctl
- MAKER_bopts_Danio_rerio.ctl
- MAKER_bopts_Drosophila_melanogaster.ctl
- MAKER_bopts_Oryza_sativa.ctl
- MAKER_evm_Caenorhabditis_elegans.ctl
- MAKER_evm_Danio_rerio.ctl
- MAKER_evm_Drosophila_melanogaster.ctl
- MAKER_evm_Oryza_sativa.ctl
- MAKER_exe_Caenorhabditis_elegans.ctl
- MAKER_exe_Danio_rerio.ctl
- MAKER_exe_Drosophila_melanogaster.ctl
- MAKER_exe_Oryza_sativa.ctl
- MAKER_opts_Caenorhabditis_elegans.ctl
- MAKER_opts_Danio_rerio.ctl
- MAKER_opts_Drosophila_melanogaster.ctl
- MAKER_opts_Oryza_sativa.ctl
# GINGER
## Output files
- GINGER_Caenorhabditis_elegans.gff
- GINGER_Danio_rerio.gff
- GINGER_Drosophila_melanogaster.gff
- GINGER_Homo_sapiens.gff
- GINGER_Oryza_sativa.gff
## Commands
- GINGER_command.txt
## Configuration files (option settings)
- GINGER_nextflow_Caenorhabditis_elegans.config
- GINGER_nextflow_Danio_rerio.config
- GINGER_nextflow_Drosophila_melanogaster.config
- GINGER_nextflow_Homo_sapiens.config
- GINGER_nextflow_Oryza_sativa.config
# EVM
## Output files
- EVM_Caenorhabditis_elegans.gff
- EVM_Danio_rerio.gff
- EVM_Drosophila_melanogaster.gff
- EVM_Homo_sapiens.gff
- EVM_Oryza_sativa.gff
## Commands
- EVM_command.txt
## Configuration files (option settings)
- EVM_weights_Caenorhabditis_elegans.txt
- EVM_weights_Danio_rerio.txt
- EVM_weights_Drosophila_melanogaster.txt
- EVM_weights_Homo_sapiens.txt
- EVM_weights_Oryza_sativa.txt
# MAKER
## Output files
- MAKER_Caenorhabditis_elegans.gff
- MAKER_Danio_rerio.gff
- MAKER_Drosophila_melanogaster.gff
- MAKER_Oryza_sativa.gff
## Commands
- MAKER_command.txt
## configuration files (option settings)
- MAKER_bopts_Caenorhabditis_elegans.ctl
- MAKER_bopts_Danio_rerio.ctl
- MAKER_bopts_Drosophila_melanogaster.ctl
- MAKER_bopts_Oryza_sativa.ctl
- MAKER_evm_Caenorhabditis_elegans.ctl
- MAKER_evm_Danio_rerio.ctl
- MAKER_evm_Drosophila_melanogaster.ctl
- MAKER_evm_Oryza_sativa.ctl
- MAKER_exe_Caenorhabditis_elegans.ctl
- MAKER_exe_Danio_rerio.ctl
- MAKER_exe_Drosophila_melanogaster.ctl
- MAKER_exe_Oryza_sativa.ctl
- MAKER_opts_Caenorhabditis_elegans.ctl
- MAKER_opts_Danio_rerio.ctl
- MAKER_opts_Drosophila_melanogaster.ctl
- MAKER_opts_Oryza_sativa.ctl
Files
EVM_command.txt
Files
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