Published May 23, 2023
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Taxonomy and phylogeny of Hypoxylon zhaotongensis sp. nov. (Hypoxylaceae, Xylariales), a bambusicolous fungus from Yunnan, China
Authors/Creators
- 1. Department of Botany and Microbiology, College of Science, King Saud University, P.O. Box 2455, Riyadh 11451, Saudi Arabia. & bhatdj@gmail.com; https://orcid.org/0000-0002-3800-5910
- 2. Department of Botany and Microbiology, College of Science, King Saud University, P.O. Box 2455, Riyadh 11451, Saudi Arabia. & tdawoud@ksu.edu.sa; https://orcid.org/0000-0002-1444-4185
- 3. Center for Yunnan Plateau Biological Resources Protection and Utilization, College of Biological Resource and Food Engineering, Qujing Normal University, Qujing, P.R. China. & saowaluckfai@gmail.com; https://orcid.org/0000-0002-4706-6547
- 4. Center for Yunnan Plateau Biological Resources Protection and Utilization, College of Biological Resource and Food Engineering, Qujing Normal University, Qujing, P.R. China. & 540827687@qq.com; https://orcid.org/0000-0002-6744-6707
Description
Zhang, Gui-Qing, Dai, Dong-Qin, Wijayawardene, Nalin N., Promputtha, Itthayakorn, Bhat, D. Jayarama, Dawoud, Turki M., Tibpromma, Saowaluck, Wei, Xiao-Mei (2023): Taxonomy and phylogeny of Hypoxylon zhaotongensis sp. nov. (Hypoxylaceae, Xylariales), a bambusicolous fungus from Yunnan, China. Phytotaxa 598 (2): 111-123, DOI: 10.11646/phytotaxa.598.2.1, URL: http://dx.doi.org/10.11646/phytotaxa.598.2.1
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References
- Bulliard, P. (1791) Histoire des champignons de la France, ou Traite elementaire renfermant dans un ordre methodique les descriptions et les figures des champignons qui croissent naturellemnt en France, par M. Bulliard. Vol. 1.
- Cai, L. (2020) Preface to the Special issue on Fungal Resources and Diversity. Journal of fungi 39 (4): 3. https://doi.org/CNKI:SUN:JWXT.0.2020-04-002
- Cedeno-Sanchez, M., Charria-Giron, E., Lambert, C., Luangsa-ard, J.J., Decock, C., Franke, R., Bronstrup, M. & Stadler, M. (2023) Segregation of the genus Parahypoxylon (Hypoxylaceae, Xylariales) from Hypoxylon by a polyphasic taxonomic approach. MycoKeys 95: 131-162. https://doi.org/10.3897/mycokeys.95.98125
- Dai, D.Q., Phookamsak, R., Wijayawardene, N.N., Li, W.J., Bhat, D.J., Xu, J.C., Taylor, J.E., Hyde, K.D. & Chukeatirote, E. (2017) Bambusicolous fungi. Fungal Diversity 82 (1): 1-105. https://doi.org/10.1007/s13225-016-0367-8
- Dai, D.Q., Wijayawardene, N.N., Dayarathne, M.C., Kumla, J., Han, L.S., Zhang, G.Q., Zhang, X., Zhang, T.T. & Chen, H.H. (2022) Taxonomic and Phylogenetic Characterizations Reveal Four New Species, Two New Asexual Morph Reports, and Six New Country Records of Bambusicolous Roussoella from China. Journal of Fungi 8 (5): 532. https://doi.org/10.3390/jof8050532
- Daranagama, D.A., Hyde, K.D., Sir, E.B., Thambugala, K.M., Tian, Q., Samarakoon, M.C., McKenzie, E.H.C., Jayasiri, S.C., Tibpromma, S., Bhat, J.D., Liu, X.Z. & Stadler, M. (2018) Towards a natural classification and backbone tree for Graphostromataceae, Hypoxylaceae, Lopadostomataceae and Xylariaceae. Fungal Diversity 88: 1-165. https://doi.org/10.1007/s13225-017-0388-y
- Fournier, J., Lechat, C. & Courtecuisse, R. (2016) The genus Hypoxylon (Xylariaceae) in Guadeloupe and Martinique (French West Indies). Ascomycete org 7: 145-212.
- Glez-Pena, D., Gomez-Blanco, D., Reboiro-Jato, M., Fdez-Riverola, F. & Posada, D. (2010) ALTER: program-oriented conversion of DNA and protein alignments. Nucleic Acids Research 38: 14-18. https://doi.org/10.1093/nar/gkq321
- Hall, T. (2004) BioEdit. Ibis Therapeutics, Carlsbad, CA, 92008, USA. Available from: http://www.mbio.ncsu.edu/BioEdit/bioedit.html (accessed 18 March 2005)
- Helaly, S.E., Thongbai, B. & Stadler, M. (2018) Diversity of biologically active secondary metabolites from endophytic and saprotrophic fungi of the Ascomycete order Xylariales. Natural Products Report 35: 992-1014. https://doi.org/10.1039/C8NP00010G
- Hellwig, V., Ju, Y.M., Rogers, J.D., Fournier, J. & Stadler, M. (2005) Hypomiltin, a novel azaphilone from Hypoxylon hypomiltum, and chemotypes in Hypoxylon sect. Hypoxylon as inferred from analytical HPLC profiling. Mycological Progress 4: 39-54. https://doi.org/10.1007/s11557-006-0108-6
- Huelsenbeck, J.P. & Ronquist, F. (2001) MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics 17: 754-755. https://doi.org/10.1093/bioinformatics/17.8.754
- Jayasiri, S.C., Hyde, K.D., Ariyawansa, H.A., Bhat, J., Buyck, B., Cai, L., Dai, Y.C., Abd-Elsalam, K.A., Ertz, D., Hidayat, I., Jeewon, R., Jones, E.B.G., Bahkali, A.H., Karunarathna, S.C., Liu, J.K., Luangsa-ard, J.J., Lumbsch, H.T., Maharachchikumbura, S.S.N., McKenzie, E.H.C., Moncalvo, J.M., Ghobad-Nejhad, M., Nilsson, H., Pang, K.A., Pereira, O.L., Phillips, A.J.L., Raspe, O., Rollins, A.W., Romero, A.I., Etayo, J., Selcuk, F., Stephenson, S.L., Suetrong, S., Taylor, J.E., Tsui, C.K.M., Vizzini, A., Abdel-Wahab, M.A., Wen, T.C., Boonmee, S., Dai, D.Q., Daranagama, D.A., Dissanayake, A.J., Ekanayaka, A.H., Fryar, S.C., Hongsanan, S., Jayawardena, R.S., Li, W.J., Perera, R.H., Phookamsak, R., de Silva, N.I., Thambugala, K.M., Tian, Q., Wijayawarden, N.N., Zhao, R.L., Zhao, Q., Kang, J.C. & Promputtha, I. (2015) The Faces of fungi database: fungal names linked with morphology and phylogeny and human impacts. Fungal Diversity 74: 3-18. https://doi.org/10.1007/s13225-015-0351-8
- Jiang, H.B., Phookamsak, R., Hyde, K.D., Mortimer, P.E., Xu, J.C., Kakumyan, P. & Kumla, J. (2021) A taxonomic appraisal of bambusicolous fungi in Occultibambusaceae (Pleosporales, Dothideomycetes) with new collections from Yunnan Province, China. Life 11 (9): 932. https://doi.org/10.3390/life11090932
- Jiang, J.P., Du, C., Liu, B., Wang, K., Cai, L., Li, Q. & Huang, X.L. (2022) Bioinventory in China: progress and perspectives. Biodiversity Science 30: 22531. https://doi.org/10.17520/biods.2022531
- Ju, Y.M. & Rogers, J.D. (1996) A revision of the Genus Hypoxylon. American Phytopathological Society (APS Press).
- Katoh, K. & Standley, D.M. (2013) MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Molecular Biology and Evolution 30: 772-780. https://doi.org/10.1093/molbev/mst010
- Kuhnert, E., Fournier, J., Persoh, D., Luangsa-ard, J.J.D. & Stadler, M. (2014a) New Hypoxylon species from Martinique and new evidence on the molecular phylogeny of Hypoxylon based on ITS rDNA and β- tubulin data. Fungal Diversity 64: 181-203. https://doi.org/10.1007/s13225-013-0264-3
- Kuhnert, E., Heitkamper, S., Fournier, J., Surup, F. & Stadler, M. (2014b) Hypoxyvermelhotins A-C, new pigments from Hypoxylon lechatii sp. nov. Fungal Biology 118: 242-252. https://doi.org/10.1016/j.funbio.2013.12.003
- Lambert, C., Wendt, L., Hladki, A.I., Stadler, M. & Sir, E.B. (2019) Hypomontagnella (Hypoxylaceae): A new genus segregated from Hypoxylon by a polyphasic taxonomic approach. Mycological Progress 18 (1-2): 187-201. https://doi.org/10.1007/s11557-018-1452-z
- Liese, W. & Kohl, M. (eds.) (2015) Bamboo: The Plant and its Uses. Springer International Publishing: Cham, Switzerland. 356 pp. https://doi.org/10.1007/978-3-319-14133-6
- Liu, Y., Whelen, S. & Hall, B. (1999) Phylogenetic relationships among Ascomycetes: evidence from an RNA polymerse II subunit. Molecular Biology and Evolution 16: 1799-1808. https://doi.org/10.1093/oxfordjournals.molbev.a026092
- Maharachchikumbura, S.S., Hyde, K.D., Jones, E.B.G., McKenzie, E.H.C., Huang, S.K., Abdel-Wahab, M.A., Daranagama, D.A., Dayarathne, M., D'souza, M.J., Goonasekara, I.D., Hongsanan, S., Jayawardena, R.S., Kirk, P.M., Konta, S., Liu, J.K., Liu, Z.Y., Norphanphoun, C., Pang, K.L., Perera, R.H., Senanayake, I.C., Shang, Q., Shenoy, B.D., Xiao, Y.P., Bahkali, A.H., Kang, J.C., Somrothipol, S., Suetrong, S., Wen, T.C. & Xu, J.C. (2015) Towards a natural classification and backbone tree for Sordariomycetes. Fungal Diversity 72: 199-301. https://doi.org/10.1007/s13225-015-0331-z
- Ma, H.X., Vasilyeva, L. & Li, Y. (2012) Hypoxylon from China-2: H. dengii sp. nov. and H. crocopeplum new to China. Mycotaxon 122: 1-5. https://doi.org/ 10.5248/122.1
- Ma, H.X., Qiu, J.Z., Xu, B. & Li, Y. (2018) Two Hypoxylon species from Yunnan Province based on morphological and molecular characters. Phytotaxa 376: 27-36. https://doi.org/10.11646/phytotaxa.376.1.3
- Ma, H., Song, Z., Pan, X., Li, Y., Yang, Z. & Qu, Z. (2022) Multi-Gene Phylogeny and Taxonomy of Hypoxylon (Hypoxylaceae, Ascomycota) from China. Diversity 14: 37.
- Manandhar, R., Kim, J.H. & Kim, J.T. (2017) Environmental, social and economic sustainability of bamboo and bamboo-based construction materials in buildings. Journal of Asian Architecture and Building Engineering 18: 49-59. https://doi.org/10.1080/13467581.2019.1595629
- Miller, M.A., Pfeiffer, W. & Schwartz, T. (2010) Creating the CIPRES Science Gateway for inference of large phylogenetic trees. In: 2010 Gateway Computing Environments Workshop (GCE). New Orleans, LA, USA, pp. 1-8. https://doi.org/10.1109/GCE.2010.5676129
- Nylander, J.A.A. (2004) MrModeltest 2.0. Program distributed by the author. Evolutionary Biology Centre, Uppsala University.
- O'donnell, K. & Cigelnik, E. (1997) Two divergent intragenomic rDNA ITS2 types within a monophyletic lineage of the fungus Fusarium are nonorthologous. Molecular Phylogenetics and Evolution 7: 103-116. https://doi.org/10.1006/mpev.1996.0376
- Phookamsak, R., Jiang, H., Suwannarach, N., Lumyong, S., Xu, J., Xu, S., Liao, C.F. & Chomnunti, P. (2022) Bambusicolous Fungi in Pleosporales: Introducing Four Novel Taxa and a New Habitat Record for Anastomitrabeculia didymospora. Journal of Fungi 8: 630. https://doi.org/ 10.3390/jof8060630
- Rambaut, A. (2006) FigTree. Tree drawing tool version 1.4. 0. University of Edinburgh: Institute of Evolutionary Biology. [http://tree.bio. ed.ac.uk/software/figtree/]
- Rannala, B. & Yang, Z. (1996) Probability distribution of molecular evolutionary trees: a new method of phylogenetic inference. Joural of molecular evolution 43: 304-311. https://doi.org/10.1007/BF02338839
- Rogers, J.D. (2018) The Xylariaceae Systematic, Biological and Evolutionary Aspects. Mycologia 71 (1): 1-42. https://doi.org/10.1080/00275514.1979.12020984
- Ronquist, F. & Huelsenbeck, J.P. (2003) MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19: 1572- 1574. https://doi.org/10.1093/bioinformatics/btg180
- Senanayake, I.C., Rathnayaka, A.R., Marasinghe, D.S., Calabon, M.S., Gentekaki, E., Wanasinghe, D.N., Lee, H.B., Hurdeal, V.G., Pem, D., Dissanayake, L.S., Wijesinghe, S.N., Bundhun, D., Nguyen, T.T., Goonasekara, I.D., Abeywickrama, P.D., Bhunjun, C.S., Chomnunti, P., Boonmee, S., Jayawardena, R.S., Wijayawardene, N.N., Doilom, M., Jeewon, R., Bhat, J.D., Zhang, H.X. & Xie, N. (2020) Morphological approaches in studying fungi: collection, examination, isolation, sporulation and preservation. Mycosphere 11: 2678-2754. https://doi.org/10.5943/mycosphere/11/1/20
- Sir, E.B., Kuhnert, E., Lambert, C., Hladki, A.I., Romero, A.I. & Stadler, M. (2016) New species and reports of Hypoxylon from Argentina recognized by a polyphasic approach. Mycological Progress 15: 42. https://doi.org/10.1007/s11557-016-1182-z
- Stadler, M., Fournier, J., Granmo, A. & Beltran-Tejera, E. (2008) The "red Hypoxylons" of the temperate and subtropical Northern hemisphere. North American Fungi 3: 73-125. https://doi.org/10.2509/naf2008.003.0075
- Stadler, M. (2011) Importance of secondary metabolites in the Xylariaceae as parameters for assessment of their taxonomy, phylogeny, and functional biodiversity. Current Research in Environmental & Applied Mycology 1: 75-133. https://doi.org/10.5943/cream/1/2/1
- Tamura, K., Stecher, G., Peterson, D., Filipski, A. & Kumar, S. (2013) MEGA6: molecular evolutionary genetics analysis version 6.0. Molecular Biology and Evolution 30: 2725-2729. https://doi.org/10.1093/molbev/mst197
- Vilgalys, R. & Hester, M. (1990) Rapid genetic identification and mapping of enzymatically amplified ribosomal DNA from several Cryptococcus species. Journal of bacteriology 172: 4238-4246. https://doi.org/10.1128/jb.172.8.4238-4246.1990
- Wendt, L., Sir, E.B., Kuhnert, E., Heitkamper, S., Lambert, C., Hladki, A.I., Romero, A.I., Luangsa-ard, J.J., Srikitikulchai, P., Persoh, D. & Stadler, M. (2018) Resurrection and emendation of the Hypoxylaceae, recognised from a multigene phylogeny of the Xylariales. Mycological Progress 17 (1-2): 115-154. https://doi.org/10.1007/s11557-017-1311-3
- White, T.J., Bruns, T., Lee, S. & Taylor, J. (1990) Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis, M.A., Gelfand, D.H., Sninsky, J.J. & White, T.J. (Eds.) PCR Protocols: A guide to methods and applications. Academic Press, San Diego, pp. 315-322. https://doi.org/10.1016/B978-0-12-372180-8.50042-1
- Wijayawardene, N.N., Dissanayake, L.S., Dai, D.Q., Xiao, Y.P., Wen, T.C., Karunarathna, S.C., Wu, H.X., Zhang, H., Tibpromma, S., Kang, J.C., Wang, Y., Shen, X.C., Tang, L.Z., Deng, C.Y., Liu, Y.X. & Kang, Y.Q. (2021) Yunnan-Guizhou Plateau: a mycological hotspot. Phytotaxa 523 (1): 1-31 https://doi.org/10.11646/phytotaxa.523.1.1
- Wijayawardene, N.N., Dai, D.Q., Zhu, M.L., Wanasinghe, D.N., Kumla, J., Zhang, G.Q., Zhang, T.T., Han, L.S., Tibpromma, S. & Chen, H.H. (2022) Fungi associated with dead branches of Magnolia grandiflora: A case study from Qujing, China. Frontiers in Microbiology 13: 954680. https://doi.org/10.3389/fmicb.2022.954680
- Yang, E.F., Karunarathna, S.C., Dai, D.Q., Stephenson, S.L., Elgorban, A.M., Al-Rejaie, S., Xiong, Y.R., Promputtha, I., Samarakoon, M.C. & Tibpromma, S. (2022) Taxonomy and Phylogeny of Fungi Associated with Mangifera indica from Yunnan, China. Journal of Fungi 8: 1249. https://doi.org/10.3390/jof8121249
- Zhaxybayeva, O. & Gogarten, J.P. (2002) Bootstrap, Bayesian probability and maximum likelihood mapping: exploring new tools for comparative genome analyses. BMC Genomics 3: 4. https://doi.org/10.1186/1471-2164-3-4