Published May 22, 2023
| Version 3.2.0
Dataset
Open
Default SingleM reference "metapackage" data
Authors/Creators
- 1. Centre for Microbiome Research, School of Biomedical Sciences, Queensland University of Technology
Description
SingleM is a tool for profiling shotgun metagenomes. It has a particular strength in detecting microbial lineages which are not in reference databases. The method it uses also makes it suitable for some related tasks, such as assessing eukaryotic contamination, finding bias in genome recovery, computing ecological diversity metrics, and lineage-targeted MAG recovery.
The data here is the singlem "metapackage" which is the reference package to be used with SingleM in e.g. "pipe" mode. https://github.com/wwood/singlem.
Built from Genome Taxonomy Database (GTDB) version 08-RS214.
Files
Files
(1.3 GB)
| Name | Size | |
|---|---|---|
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md5:f071bb407e137da3e8e6a0defe2a3773
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1.3 GB | Download |