Published May 14, 2023
| Version v3.2.0
Software
Open
WGLab/NanoCaller: v3.2.0 Haploid Variant Calling
Authors/Creators
- 1. Children's Hospital of Philadelphia
- 2. Toyoko
Description
Support added for haploid variant calling which has significant improvement in recall for indel calling. New feature generation methods and models are are used for haploid SNP and indel calling. Now chrY and chrM are assumed to be haploid, with additional parameter --haploid_X to specify if chrX is haploid. Another parameter --haploid_genome can be used for haploid variant calling on all chromosomes.
Files
WGLab/NanoCaller-v3.2.0.zip
Files
(22.2 MB)
| Name | Size | Download all |
|---|---|---|
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md5:943c4d752002de6bf4359bec20cf90c4
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22.2 MB | Preview Download |
Additional details
Related works
- Is supplement to
- https://github.com/WGLab/NanoCaller/tree/v3.2.0 (URL)