STAR-indexes of the pseudotranscriptomes for use in grandRescue

This package contains the STAR-indexes for the pseudotranscriptomes (T->C conversion) of the human (ensembl v90) and mouse (ensembl v102) genomes for use with the grandRescue software (https://github.com/erhard-lab/grandRescue).

These STAR-indexes were created using the grandRescue software (v1.0) and STAR (v2.7.10b) with the following parameters, where the reference files are the fasta- and gtf-files from the respective Ensembl versions of the human/mouse genome.

gedi -e CreatePseudo -fasta reference.fa -gtf reference.gtf -from T -to C

STAR   --runMode genomeGenerate      --runThreadN 24   --genomeDir STAR-index   --genomeFastaFiles reference_pseudo_T2C.fasta      --sjdbGTFfile reference_pseudo.gtf