Tara Pacific - A pan-ecosystemic approach to the -omics complexity of coral reef holobionts across the Pacific Ocean
Published April 18, 2023 | Version 1.0.0
Dataset Open

27 MAGs from the Family of Endozoicomonadaceae derived from Tara Pacific Metagenomes

Authors/Creators

  • 1. Department of Biology, Institute of Microbiology and Swiss Institute of Bioinformatics, ETH Zürich, Zürich, Switzerland
  • 2. Sorbonne Université, CNRS, LECOB, Observatoire Océanologique de Banyuls, France
  • 3. PSL Research University: EPHE-UPVD-CNRS, USR 3278 CRIOBE, Laboratoire d'Excellence CORAIL, Université de Perpignan, 52 Avenue Paul Alduy, 66860 Perpignan Cedex, France
  • 4. Sorbonne Université, CNRS, Station Biologique de Roscoff, AD2M, UMR 7144, ECOMAP, Roscoff, France
  • 5. Génomique Métabolique, Genoscope, Institut François Jacob, CEA, CNRS, Univ Evry, Université Paris-Saclay, Evry, France
  • 6. School of Marine Sciences, University of Maine, USA
  • 7. PSL Research University: EPHE-UPVD-CNRS, USR 3278 CRIOBE, Université de Perpignan, France
  • 8. Fondation Tara Océan, Base Tara, 8 rue de Prague, 75 012 Paris, France
  • 9. Department of Animal Ecology & Systematics, Justus Liebig University, Giessen, Germany
  • 10. Department of Biology, University of Konstanz, 78457 Konstanz, Germany
  • 11. Department of Biology, University of Konstanz, Konstanz, Germany
  • 12. CONACyT-Centro de Investigaciones Biológicas del Noroeste (CIBNOR). La Paz, Baja California Sur, 23096, México
  • 13. Shimoda Marine Research Center, University of Tsukuba, 5-10-1, Shimoda, Shizuoka, Japan
  • 14. School of Marine Sciences, University of Maine, Orono, 04469, Maine, USA
  • 15. Institut de Biologie de l'Ecole Normale Supérieure (IBENS), Ecole normale supérieure, CNRS, INSERM, Université PSL, 75005 Paris, France
  • 16. Sorbonne Université, CNRS, Station Biologique de Roscoff, AD2M, UMR 7144, ECOMAP 29680 Roscoff, France & Research Federation for the study of Global Ocean Systems Ecology and Evolution, FR2022/ Tara Oceans-GOSEE, 3 rue Michel-Ange, 75016 Paris, France
  • 17. Laboratoire des Sciences du Climat et de l'Environnement, LSCE/IPSL, CEA-CNRS-UVSQ, Université Paris-Saclay, F-91191 Gif-sur-Yvette, France
  • 18. Weizmann Institute of Science, Department of Earth and Planetary Sciences, 76100 Rehovot, Israel
  • 19. Université Côte d'Azur, CNRS, INSERM, IRCAN, Medical School, Nice, France and Department of Medical Genetics, CHU of Nice, France
  • 20. Université Côte d'Azur, CNRS, Inserm, IRCAN, France
  • 21. Sorbonne Université, Institut de la Mer de Villefranche sur mer, Laboratoire d'Océanographie de Villefranche, F-06230 Villefranche-sur-Mer, France
  • 22. European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK
  • 23. Centre Scientifique de Monaco, 8 Quai Antoine Ier, MC-98000, Principality of Monaco
  • 24. Marine Biodiscovery Laboratory, School of Chemistry and Ryan Institute, National University of Ireland, Galway, Ireland
  • 25. Génomique Métabolique, Genoscope, Institut François Jacob, CEA, CNRS, Univ Evry, Université Paris-Saclay, 91057 Evry, France
  • 26. Oregon State University, Department of Microbiology, 220 Nash Hall, 97331Corvallis OR USA
  • 27. Sorbonne Université, CNRS, Laboratoire d'Ecogéochimie des Environnements Benthiques (LECOB), Observatoire Océanologique de Banyuls, 66650 Banyuls sur mer, France

Description

This dataset contains 27 MAGs from the family of Endozoicomonadaceae generated from a subset of Tara Pacific metagenomes.

Contextual information of the MAGs can be found in the associated publication:  Ecology of Endozoicomonadaceae in three coral species across the Pacific Ocean, Hochart et al, submitted

 

Notes

Special thanks to the Tara Ocean Foundation, the R/V Tara crew and the Tara Pacific Expedition Participants (https://doi.org/10.5281/zenodo.3777760). We are keen to thank the commitment of the following institutions for their financial and scientific support that made this unique Tara Pacific Expedition possible: CNRS, PSL, CSM, EPHE, Genoscope, CEA, Inserm, Université Côte d'Azur, ANR, agnès b., UNESCO-IOC, the Veolia Foundation, the Prince Albert II de Monaco Foundation, Région Bretagne, Billerudkorsnas, AmerisourceBergen Company, Lorient Agglomération, Oceans by Disney, L'Oréal, Biotherm, France Collectivités, Fonds Français pour l'Environnement Mondial (FFEM), Etienne Bourgois, and the Tara Ocean Foundation teams. Tara Pacific would not exist without the continuous support of the participating institutes. The authors also particularly thank Serge Planes, Denis Allemand, and the Tara Pacific consortium.

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