Darbellay et al. Col2a1EGFP sensor supporting information

This upload is made in support of the Darbellay et al. Col2a1^EGFP sensor manuscript.
It contains the following files:

Customized genome and index, based on GRCm39/mm39

• mm39_eGFP_SV40pA.fa
• mm39_eGFP_SV40pA.fa.fai

Customized references file used for gene expression quantification, based on GRCm39.104

• mergeOverlapGenesOfFilteredTranscriptsOfMus_musculus.GRCm39.104_ExonsOnly_UCSC.gtf

See Darbellay et al. Material & Methods for detailed explanations.
Scripts used to generate the customized gtf file are available here.