MINI-AC motif mappings of Arabidopsis and maize
Authors/Creators
- 1. Center for Plant Systems Biology, VIB, 9052 Ghent, Belgium
-
2.
VIB-UGent Center for Plant Systems Biology
Description
MINI-AC motif mappings of Arabidopsis and maize.
For each species, there are the genome-wide motif mappings and the locus-based motif mappings using a non-coding genomic space of 5kb upstream of the translation start site, introns, and 1kb downstream of the translation end site.
In version 2 I added, for the locus-based on maize (Zea mays), the motif mappings using the non-coding genomic spaces of: (1) 1kb upstream of the translation start site, introns, and 1kb downstream of the translation end site and (2) 15kb upstream of the translation start site, introns, and 2.5kb downstream of the translation end site.
In version 2.5 I added the bed files with the coordinates of the small (1kb upstream of the translation start site, the 1kb downstream of the translation end site, and the introns) and large (15kb upstream of the translation start site, the 2.5kb downstream of the translation end site, and the introns) non-coding genomic spaces.
In version 3 I added for maize genome version 5 (B73 RefGen_v5), the bed files with the motif mappings using the non-coding genomic spaces of: (1) 1kb upstream of the translation start site, introns, and 1kb downstream of the translation end site and (2) 5kb upstream of the translation start site, introns, and 1kb downstream of the translation end site, and (3) 15kb upstream of the translation start site, introns, and 2.5kb downstream of the translation end site. Additionally, I added the bed files with the coordinates of the small (1kb upstream of the translation start site, the 1kb downstream of the translation end site, and the introns) and large (15kb upstream of the translation start site, the 2.5kb downstream of the translation end site, and the introns) non-coding genomic spaces.
Notes
Files
Files
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