There is a newer version of the record available.

Published April 13, 2023 | Version v0.14.2
Software Open

shenwei356/taxonkit: TaxonKit v0.14.2

Authors/Creators

  • 1. Chongqing Medical University
  • 2. DOE Joint Genome Institute
  • 3. @imb-fmg

Description

Changes
  • TaxonKit v0.14.2
    • taxonkit filter:
      • fix checking merged/deleted/not-found taxids. #80
    • taxonkit lca:
      • add a new flag -b/--buffer-size to set the size of the line buffer. #75
      • fix typos: --separater -> --separater, the former is still available for backward compatibility.
    • taxonkit reformat:
      • output compatible format for TaxIds not found in the database. #79
    • taxonkit taxid-changelog:
      • support gzip-compressed taxdump files for saving space. #78
Please cite

Shen, W., Ren, H., TaxonKit: a practical and efficient NCBI Taxonomy toolkit, Journal of Genetics and Genomics, https://doi.org/10.1016/j.jgg.2021.03.006

Links

Tips

  • run taxonkit version to check update !!!
  • run taxonkit genautocomplete to update Bash completion !!!
OS Arch File, 中国镜像 Download Count
Linux 64-bit taxonkit_linux_amd64.tar.gz,<br/> 中国镜像
Linux arm64 taxonkit_linux_arm64.tar.gz,<br/> 中国镜像
macOS 64-bit taxonkit_darwin_amd64.tar.gz,<br/> 中国镜像
macOS arm64 taxonkit_darwin_arm64.tar.gz,<br/> 中国镜像
Windows 64-bit taxonkit_windows_amd64.exe.tar.gz,<br/> 中国镜像

Files

shenwei356/taxonkit-v0.14.2.zip

Files (1.6 MB)

Name Size Download all
md5:e5499816cc9e9496bd79ed1102cae7f2
1.6 MB Preview Download

Additional details

Related works

Is supplement to
https://github.com/shenwei356/taxonkit/tree/v0.14.2 (URL)