Published March 29, 2023
| Version v1.3.1
Software
Open
Xinglab/espresso: ESPRESSO v1.3.1
Authors/Creators
Description
- Add gene_id to gtf output
- Adjust version checks and allow more recent nhmmer versions
- Handle 'X' and '=' cigar operations
- Fix bug when Q step is run with minimal arguments
- Handle secondary alignments
- Update how reads are split for C steps
- Improve error message when chr from alignment is not found in reference fasta
- Fix bug where start of novel isoform was off by 1 in gtf output
- Add automated tests
- Improve thread error checking
- Add sorting to get deterministic novel isoform IDs
Files
Xinglab/espresso-v1.3.1.zip
Files
(14.0 MB)
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md5:e2bb1fdc4c554dbde32d4ee9cbb0bbdd
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Additional details
Related works
- Is supplement to
- https://github.com/Xinglab/espresso/tree/v1.3.1 (URL)