cheminformatics-microservice

3.9.0 (2026-03-17)

Features

• add AnimatedOutlet page transitions with mode=sync overlap (12e6fb2)
• add breadcrumbs component and wire CommandPalette + Breadcrumbs into App.tsx (c41f6c8)
• add btn-hover-lift and focus-ring-animate CSS utilities, update Button component (f00ce43)
• add command palette with navigation registry and shadcn Command component (8d7f333)
• add ComparisonContext and ComparisonTray components (1f2c174)
• add ComparisonView, AddToCompareButton, wire into App.tsx (31f26d7)
• add ESLint v9 flat config, Vitest setup, and smoke test (6a777bc)
• add feedback component library and error messaging infrastructure (cb80f53)
• add glass-bold, glass-mobile, clay-interactive, clay-pressed CSS utilities and glass-refraction-hover rule (f2f86d3)
• add gradient mesh config, bento layout config, useMediaQuery hook, GradientMesh and LiquidGlassFilter components (5efb791)
• add husky pre-commit hooks and CI workflow (56385f4)
• add Loader2 spinner to submit buttons across 21 tool views (bf2288e)
• add shadcn Resizable and ResizableToolPanel wrapper (444b19e)
• add TypeScript types to services, context, and config (4e5427c)
• add useDebounce hook and SMILESPreview component with tests (22a93a4)
• align header width with page content and add ChemAudit to About (5536574)
• create BentoGrid and BentoCard reusable components (e4575ee)
• create Vite config, migrate index.html, migrate all env vars (f458af2)
• enhance molecule cards with hover glow and expand/collapse (7207796)
• glass treatment for Header and Footer (2d2fe2e)
• gradient mesh + glass containers on OCSR, About, Privacy, Terms (3a358ed)
• header fades to transparent on scroll (6c530f5)
• immersive HomePage with 3D caffeine molecule background (dc2ae43)
• install React 19, create TypeScript infrastructure, rename all 61 files (57463b2)
• install shadcn/ui dependencies, configure path aliases, create cn() utility (7c38905)
• integrate SMILESPreview into SMILESInput component (686c847)
• manage Ketcher standalone as downloaded dependency (4db70cf)
• migrate AboutPage buttons and Footer resource cards to shadcn (785f72c)
• migrate all react-icons and @fortawesome imports to lucide-react (c1f8c7b)
• migrate ChemPage from sidebar tabs to bento grid (b902c57)
• migrate ConvertPage, DepictPage, ToolsPage to bento grid layout (a9d0290)
• migrate framer-motion to motion package with spring physics enhancements (b45c386)
• migrate OCSRPage and HomePage to shadcn Button and Card (80cfa90)
• rebuild 3D molecule with bloom postprocessing + neon glow (fc3f525)
• redesign header as floating glass pill with animated nav (dd5b33d)
• redesign HomePage with glass hero and bento feature cards (54a340b)
• refactor 14 chem/ tool views to glass skeletons + error cards (3efcbf9)
• refactor 7 convert/depict/tools views to glass skeletons + error cards (17e7efc)
• refine CSS-first Tailwind v4 configuration (55b2c03)
• remove molecule comparison feature (f9194c4)
• remove SMILES inline preview feature (ddf41c1)
• replace alert() with toast.error and delete LoadingScreen (a2ff45e)
• replace CRA with Vite stack, restructure package.json (04cebd4)
• replace mobile menu with shadcn/ui Sheet and clean up isDarkMode ternaries (0df92c3)
• replace native buttons with shadcn/ui Button across all files (9488a48)
• replace native buttons with shadcn/ui Button across all pages (33f59d4)
• replace native form inputs with shadcn/ui across all components (ccc2ecc)
• replace NPlikenessView alert() with glass-bold info expansion box (5ff1015)
• responsive fixes, navigation wayfinding, scrollbar-hide, and tests (c28cb3d)
• rewrite CSS to shadcn/ui OKLCH variables, add FOUC prevention, enhance AppContext (63045a6)
• route-level code splitting with React.lazy and vendor chunk splitting (994bdbe)
• simplify tab content to 150ms cross-fade, add stagger/layout animations (a759526)
• unify tab styling with sky/slate palette and ghost variant (66c0044)
• update Dockerfile and docker-compose for Vite (cf7fcff)
• upgrade Tailwind CSS v3 to v4 with Vite plugin (cff7d91)
• upgrade to Node 24, regenerate package-lock.json (623cbf6)
• wire AddToCompareButton into ChemPage expanded tool cards (a0329de)
• wire Axios toast interceptor and add feedback component tests (5bec898)
• wire ResizableToolPanel into BentoCard expanded view (ee39aea)

Bug Fixes

• add husky as root devDependency, remove .planning from tracking (589040b)
• add Plan 02 dependency to Plan 04 (BentoGrid.tsx) (51ff442)
• center nav tabs absolutely within header pill (3f5c08d)
• ci: rename REACT_APP_API_URL to VITE_API_URL in Docker build args (417003c)
• docker: add all OpenCV system deps for Debian 12 migration (f695abc)
• docker: switch to openjdk-17 (openjdk-11 unavailable in Debian 12) (fc12195)
• docker: upgrade base image to fix surge GLIBC_2.34 requirement (764aa6e)
• docker: use libglib2.0-0 (t64 rename is Debian 13, not 12) (a0fcdd3)
• docker: use miniconda3:24.11.1-0 (Debian 12, GLIBC 2.36) (8f71b38)
• feature cards in single row bento grid on wide screens (4cf2bb4)
• fix blue bar, header cramping, and responsive breakpoints (fa8593a)
• fix header pill spacing, separator visibility, and layout (e97f6f2)
• frontend: fix header fade, excess whitespace, and page transition wobble (444d9d3)
• gitignore (36eecc6)
• improve header scaling at lg/xl/2xl breakpoints (601cbb6)
• keep header clickable at all scroll positions, reveal on hover (9215476)
• minimal 3D molecule with light/dark mode + wider hero card (8c13be1)
• pill-shaped header, separator, reduced height, day/night toggle (6a83e0a)
• prevent Ketcher iframe from scroll-jacking parent page (d1cc83e)
• remove glass-refraction-hover effect per user feedback (28d9c99)
• remove header top padding to eliminate background bar (d27fbcf)
• remove unused BentoGrid, bentoLayouts, and ResizableToolPanel (3497d13)
• resolve all Tailwind v4 migration edge cases (ff1e22c)
• resolve console errors, animation jank, and header layout issues from UAT (a400b17)
• restore react-icons and @fortawesome dependencies (77e13f9)
• revert ChemPage from bento grid to sidebar-tab navigation (65437f4)
• revert ConvertPage, DepictPage, ToolsPage to tab navigation (4595434)
• revise plans based on checker feedback (942aef5)
• revise plans based on checker feedback (1e21def)
• revise plans based on checker feedback (c725476)
• revise plans based on checker feedback (27f08cb)
• switch header to fixed positioning to eliminate color bar (420513f)
• test: update page transition tests to match new opacity-only animation (ed20373)
• test: wrap MoleculeCard test in ComparisonProvider (f4728ad)
• update VISUAL-02 to reflect approved tab-based navigation (efcd5bf)
• wire AddToCompareButton into ChemPage tab-based results (c47f5b7)

Documentation

• add validation strategy (61801a0)
• add validation strategy (0084229)
• add validation strategy (8d50d6c)
• add validation strategy (88061aa)
• add validation strategy (8fa9abe)
• add validation strategy (e7aca94)
• add validation strategy (373ec4f)
• add verification report with gap findings (b73c912)
• capture phase context (c0cd183)
• capture phase context (74e0bb7)
• capture phase context (1239447)
• capture phase context (a46661a)
• capture phase context (3b95a85)
• capture phase context (b56ff8a)
• capture phase context (3423153)
• complete animation polish plan - page transitions, button interactions, tab cross-fades (d881848)
• complete BentoGrid + ChemPage migration plan (73030f2)
• complete bulk component migration plan (51f8c37)
• complete code splitting and responsive fixes plan (92a3753)
• complete command palette + breadcrumbs plan (d6d5ad9)
• complete comparison mode plan (412855e)
• complete CRA-to-Vite migration plan (c13208b)
• complete developer tooling plan (6ba59fe)
• complete Docker update and migration verification plan (019f4bf)
• complete edge case audit and visual verification plan (93c02d9)
• complete feedback component library plan (19a9e8d)
• complete final component pass and visual verification plan (60ee16f)
• complete foundation plan -- CSS utilities, gradient mesh, bento layouts, components (74a4917)
• complete frontend modernization research (5231955)
• complete gap closure plan - NPlikenessView alert + submit button spinners (cc57602)
• complete gap closure plan -- shadcn Button + Card across all pages (69d8b9e)
• complete glass sweep and visual polish plan (e86680d)
• complete icon library consolidation plan (dd7f114)
• complete inline SMILES preview plan (ef56526)
• complete motion package migration plan (509f56e)
• complete page migrations plan (0bbdf9f)
• complete phase execution (d053292)
• complete phase execution (b9baf7b)
• complete phase execution (bc5f022)
• complete phase execution (5d37ec9)
• complete phase execution and re-verification (b534d76)
• complete phase execution and verification (2aaad4b)
• complete phase execution and verification (6bacc59)
• complete React 19 + TypeScript strict mode plan (5dc5bb7)
• complete resizable panels and enhanced molecule cards plan (36cab71)
• complete shadcn/ui foundation plan (a81db68)
• complete Tailwind v4 migration plan (696fdfe)
• complete tool view LoadingScreen refactoring plan (d711464)
• complete Wave 0 test stubs plan (7abebe4)
• create gap closure plan for NPlikenessView alert and submit button spinners (b714c76)
• create gap closure plan for remaining shadcn/ui migrations (5e05004)
• create phase plan (288aace)
• create phase plan - animations + power features (319d2cb)
• create phase plan -- 6 plans across 5 waves (0ccf19d)
• create phase plan — 3 plans across 2 waves (dd78a54)
• create phase plan (3 plans, 2 waves) (49c5c49)
• create phase plan for React 19 + TypeScript 5 + Motion migration (59a1f4e)
• create phase plan for Tailwind v4 migration (a55d1c0)
• create roadmap (6 phases) (ac0a21f)
• define v1 requirements (563f5e1)
• gap closure research for OCSRPage and HomePage component migration (1a48fed)
• initialize project (2576e8f)
• map existing codebase (5157cee)
• record phase 04.1 context session (d20a6e0)
• record phase 1 context session (5ea4e72)
• record phase 2 context session (3ff7dd9)
• record phase 3 context session (213cfb3)
• record phase 4 context session (d716e71)
• record phase 5 context session (1347c3b)
• record phase 6 context session (4429217)
• research phase domain (28091af)
• research phase domain (aba5cae)
• research phase domain (b1cfd92)
• research phase domain - component system, theming, icon migration (e00d074)
• research phase domain - React 19, TypeScript 5, Motion migration (928e34c)
• research phase domain -- glassmorphism, bento grids, resizable panels, comparison mode (ba99c42)
• research Tailwind v4 migration domain (bb5405a)
• update context — remove dead @headlessui/react instead of upgrading (d15102b)