Published March 9, 2023
| Version v2.1.33.16
Software
Open
broadinstitute/viral-pipelines: v2.1.33.16
Authors/Creators
- 1. Broad Institute
- 2. Broad Institute of MIT and Harvard
- 3. MIT
- 4. Merck
- 5. @broadinstitute
- 6. DynoTx
- 7. Aalborg University
- 8. Contractor at The Broad Institute
- 9. @gitlabhq
Description
What's Changed
functionality changes and bug fixes
- Convert amplicon16S_analysis workflow (QIIME) from single-sample to multi-sample by @golu099 in #452
- samtools ampliconstats needs bed in certain order by @dpark01 in #454
- parameterize and update defaults for VM shapes in nextstrain tasks by @dpark01 in #455
- parameterize more assembly knobs by @dpark01 in #457
- update to pangolin 4.2 / pdata 1.18 by @dpark01 in #451
- Update pangolin, nextclade, and vadr docker images by @dpark01 in #456
- documentation build fixes for ReadTheDocs by @tomkinsc in #450
- update comment about DX_API_TOKEN by @tomkinsc in #449
Full Changelog: https://github.com/broadinstitute/viral-pipelines/compare/v2.1.33.15...v2.1.33.16
Files
broadinstitute/viral-pipelines-v2.1.33.16.zip
Files
(19.9 MB)
| Name | Size | Download all |
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md5:a09cb7d1cbba7e298733438fd1b062f3
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Additional details
Related works
- Is supplement to
- https://github.com/broadinstitute/viral-pipelines/tree/v2.1.33.16 (URL)