Software for "Ancient gene linkages support ctenophores as sister to other animals"

Software for the manuscript: "Ancient gene linkages support ctenophores as sister to other animals." by:

Schultz, Darrin, University of Vienna
Haddock, Steven H. D., Monterey Bay Aquarium Research Institute
Bredeson, Jessen V., University of California, Berkeley
Green, Richard E., University of California, Santa Cruz
Simakov, Oleg, University of Vienna
Rokhsar, Daniel S., University of California, Berkeley

The files included in this manuscript include:

1. LICENSE - the GPL3 license that is applicable to all of this software.
2. odp-0.2.0.zip - the oxford dot plot software used for the production of the data of this manuscript
3. odp-0.3.0.zip - the oxford dot plot software available at the time of this publication's release.
4. OG_analysis.py - The script used to perform the orthogroup analysis detailed in Supplementary Information 10 of the manuscript.
5. OG_to_rbh.py - The script used to convert the orthogroup file into individual rbh files, also detailed in Supplementary Information 10 of the manuscript.
6. orthology_conservation_score.py - The script used to calculate the orthology conservation between Hormiphora and Capsaspora, or Hormiphora and Salpingoeca, in Supplementary Information 11 of the manuscript.

Long-term development of the odp software is here: https://github.com/conchoecia/odp
The dataset produced from this software is available on Dryad: https://doi.org/10.5061/dryad.dncjsxm47