Published July 28, 2022
| Version 3.0.2
Software
Open
MBoemo/DNAscent: 3.0.2
Description
- DNAscent detect now detects two different thymidine analogues, BrdU and EdU, in the same molecule,
- DNAscent forkSense now uses the spatial patterning of EdU and BrdU to determine fork direction as in DNA fibre,
- dnascent2bedgraph utility updated to plot both EdU and BrdU tracks in genome browsers,
- DNAscent regions is now deprecated and has been fully superceded by DNAscent forkSense,
- DNAscent psl is now deprecated as reads can be more comprehensively plotted using the dnascent2bedgraph utility,
- Migration from Tensorflow 1.14 to 2.4.1 and, correspondingly, GPU usage now requires CUDA 11 and cuDNN 8,
- Released with Totanes FIG, Gockel J, Chapman SE, Bartfai R, Boemo MA, Merrick CJ. Replication origin mapping in the malaria parasite Plasmodium falciparum. bioRxiv.
Files
MBoemo/DNAscent-3.0.2.zip
Files
(6.7 MB)
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md5:b1a889aa13e0d8c38a9c6b8d69e4e560
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Additional details
Related works
- Is supplement to
- https://github.com/MBoemo/DNAscent/tree/3.0.2 (URL)