Published February 2, 2023
| Version v1
Dataset
Open
Identifying Spatial Co-occurrence in Healthy and InflAmed tissues (ISCHIA)
Description
Integrated IBD scRNASeq reference: Seurat object and cell type markers.
Molecular Cartography (Resolve) data data of human colon samples. 6 ulcerative colitis colon resections: 3 inflamed, 3 non-inflamed areas (4 patients in total). Segmented object (Seurat).
Visium (10X) spatial transcriptomics data of human colon samples. 4 ulcerative colitis colon resections: 2 inflamed, 2 non-inflamed areas (3 patients in total).
Supplementary Table 1: positively co-occurring lignads and receptors in composition class 5.
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