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Published January 28, 2023 | Version 0.6.8
Software Open

FelixKrueger/TrimGalore: Version 0.6.8

Authors/Creators

  • 1. Altos Labs, Cambridge Institute of Science
  • 2. @seqeralabs
  • 3. @tecangenomics
  • 4. University of Oxford
  • 5. @aertslab

Description

Version 0.6.8

  • Added new option --stranded_illumina to allow trimming of the adapter sequence ACTGTCTCTTATA (which looks like the Nextera sequence but with an additional A from A-tailing). See also here: https://github.com/FelixKrueger/TrimGalore/issues/127.

  • Trim Galore will now preferentially use igzip for decompression, if installed. More info here

  • finally dropped the option --trim1 entirely. It wasn't useful beyond Bowtie 1 paired-end mode, and hence people should cease using it

  • the option --max_n COUNT now interprets value between 0 and 1 as fraction of the read length (see here)

  • enabled the option --max_length also for paired-end trimming (of small RNAs)

Files

FelixKrueger/TrimGalore-0.6.8.zip

Files (26.8 MB)

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Additional details

Related works

Is supplement to
https://github.com/FelixKrueger/TrimGalore/tree/0.6.8 (URL)