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Published January 24, 2023 | Version 2.10.1
Software Open

nextstrain/nextclade: 2.10.1

Authors/Creators

  • 1. Biozentrum, University of Basel
  • 2. @neherlab @nextstrain
  • 3. @FredHutch / @blab / @nextstrain
  • 4. @nextstrain
  • 5. @Snyk
  • 6. University of North Carolina
  • 7. University of Freiburg
  • 8. ETH Zurich @cevo-public
  • 9. Oklahoma Medical Research Foundation
  • 10. Faculty of Computer Science, Dalhousie University
  • 11. The Francis Crick Institute
  • 12. Fred Hutchinson

Description

Nextclade CLI 2.10.1 (2023-01-24) Ensure --output-all, --output-tsv, --output-csv can be used together again in Nextclade CLI

This fixes a regression introduced in Nextclade CLI 2.10.0, where --output-all, --output-tsv, --output-csv arguments became mutually exclusive. This was not intended and now resolved.

This bug was breaking out bioconda checks, so Nextclade CLI version 2.10.0 will not be available in bioconda. Use 2.10.1 instead.

Nextclade Web is not affected.

<details> <summary><h3>Commit history</h3> (click to expand)</summary>

</details> Instructions

📥 Nextclade CLI & Nextalign CLI can be downloaded from the links in the "Assets" section just below. There click "Show all" to show more options. Note the difference between "nextalign" and "nextclade" files.

🌐 Nextclade Web is available at https://clades.nextstrain.org

🐋 Docker images are available at DockerHub

📚 To understand how it all works, make sure to read the Documentation

Files

nextstrain/nextclade-2.10.1.zip

Files (9.8 MB)

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md5:81765474624c7e103c937d53c1ea73b2
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Additional details

Related works

Is supplement to
https://github.com/nextstrain/nextclade/tree/2.10.1 (URL)