Published January 4, 2023 | Version v1
Journal article Restricted

Collybiopsis bambusicola sp. nov. in Yunnan Province, Southwestern China

  • 1. Institute of Microbiology, School of Ecology and Nature Conservation, Beijing Forestry University, Beijing 100083, China. & zhangqiuyue@bjfu.edu.cn; https://orcid.org/0000-0001-9458-3566
  • 2. Institute of Microbiology, School of Ecology and Nature Conservation, Beijing Forestry University, Beijing 100083, China. & zhoumeng9612@bjfu.edu.cn; https://orcid.org/0000-0002-9343-7513
  • 3. Beijing Key Laboratory for Forest Pest Control, School of Forestry, Beijing Forestry University, Beijing 100083, China & shifengming@bjfu.edu.cn; https://orcid.org/0000-0002-0000-279X
  • 4. Institute of Microbiology, School of Ecology and Nature Conservation, Beijing Forestry University, Beijing 100083, China. & jingsi1788@126.com; https://orcid.org/0000-0001-9229-0727
  • 5. National Institute of Occupational Health and Poison Control, Chinese Center for Disease Control and Prevention, Beijing 100050, China & lihaijiao715@126.com; https://orcid.org/0000-0002-7227-4479

Description

Zhang, Qiu-Yue, Zhou, Meng, Shi, Feng-Ming, Si, Jing, Li, Hai-Jiao (2023): Collybiopsis bambusicola sp. nov. in Yunnan Province, Southwestern China. Phytotaxa 578 (1): 125-135, DOI: 10.11646/phytotaxa.578.1.7, URL: http://dx.doi.org/10.11646/phytotaxa.578.1.7

Files

Restricted

The record is publicly accessible, but files are restricted. <a href="https://zenodo.org/account/settings/login?next=https://zenodo.org/records/7517756">Log in</a> to check if you have access.

Linked records

Additional details

Identifiers

LSID
urn:lsid:plazi.org:pub:FFEBD0736C4DF74F6739A93AFF8CFFF5
URL
http://publication.plazi.org/id/FFEBD0736C4DF74F6739A93AFF8CFFF5

References

  • Antonin, V. & Noordeloos, M.E. (1993) A monograph of Marasmius, Collybia, and related genera in Europe: Marasmius, Setulipes, and Marasmiellus. Libri botanici 8: 1-229.
  • Chenna, R., Sugawara, H., Koike, T., Lopez, R., Gibson, T.J., Higgins, D.G. & Thompson, J.D. (2003) Multiple sequence alignment with the Clustal series of programs. Nucleic Acids Research 31: 3497-3500. https://doi.org/10.1093/nar/gkg500
  • Cui, B.K., Li, H.J., Ji, X., Zhou, J.L., Song, J., Si, J., Yang, Z.L. & Dai, Y.C. (2019) Species diversity, taxonomy and phylogeny of Polyporaceae (Basidiomycota) in China. Fungal Diversity 97: 137-392. https://doi.org/10.1007/s13225-019-00427-4
  • Desjardin, D.E., Halling, R.E. & Hemmes, D.E. (1999) Agaricales of the Hawaiian Islands. 5. The genera Rhodocollybia and Gymnopus. Mycologia 91: 166-176. https://doi.org/10.2307/3761206
  • Dutta, A.K., Wilson, A.W., Antonin, V. & Acharya, K. (2015) Taxonomic and phylogenetic study on gymnopoid fungi from Eastern India. I. Mycological Progress 14: 1-18. https://doi.org/10.1007/s11557-015-1094-3
  • Earle, F.S. (1909) The genera of the North American gill fungi. Bulletin of the New York Botanical Garden 5: 373-451.
  • Gillen, K., Laessoe, T., Kirschner, R. & Piepenbring, M. (2012) Favolaschia species (Agaricales, Basidiomycota) from Ecuador and Panama. Nova Hedwigia 96: 117-165. https://doi.org/10.1127/0029-5035/2012/0070
  • Hall, T.A. (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symposium Series 41: 95-98.
  • Hillis, D.M. & Bull, J.J. (1993) An empirical test of bootstrapping as a method for assessing confidence in phylogenetic analysis. Systematics and Biodiversity 42: 182-192. https://doi.org/10.1093/sysbio/42.2.182
  • Hughes, K. & Petersen, R.H. (2015) Transatlantic disjunction in fleshy fungi III: Gymnopus confluens. MycoKeys 9: 37-63. https://doi.org/10.3897/mycokeys.9.4700
  • Hughes, K.W., Mather, D.A. & Petersen, R.H. (2010) A new genus to accommodate Gymnopus acervatus (Agaricales). Mycologia 102: 1463-1478. https://doi.org/10.3852/09-318
  • Kalyaanamoorthy, S., Minh, B.Q., Wong, T.K., Von Haeseler, A. & Jermiin, L.S. (2017) ModelFinder: Fast model selection for accurate phylogenetic estimates. Nature methods 14: 587-589. https://doi.org/10.1038/nmeth.4285
  • Kim, J.S., Cho, Y., Park, K.H., Park, J.H., Kim, M., Kim, C.S. & Lim, Y.W. (2022) Taxonomic study of Collybiopsis (Omphalotaceae, Agaricales) in the Republic of Korea with seven new species. MycoKeys 88: 79-108. https://doi.org/10.3897/mycokeys.88.79266
  • Mata, J.L. (2002) Taxonomy and systematics of Lentinula, Gymnopus and Rhodocollybia (Agaricales, Fungi) with emphasis on oak forests of southern Costa Rica. PhD Thesis, University of Tennessee, Knoxville.
  • Murrill, W. (1915) Agaricaceae (pars). Flora of North America 9: 286-296.
  • Oliveira, J.J., Vargas-Isla, R., Cabral, T.S., Rodrigues, D.P. & Ishikawa, N.K. (2019) Progress on the phylogeny of the Omphalotaceae: Gymnopus s. str., Marasmiellus s. str., Paragymnopus gen. nov. and Pusillomyces gen. nov. Mycological Progress 18: 713-739. https://doi.org/10.1007/s11557-019-01483-5
  • Page, R.D.M. (1996) TreeView: An application to display phylogenetic trees on personal computers. Computer Applications in the Biosciences 12: 357-358.
  • Petersen, J.H. (1996) The Danish mycological society's colour-chart. Foreningen til Svampekundskabens Fremme, Greve. https://doi.org/10.1093/bioinformatics/12.4.357
  • Petersen, R. & Hughes, K. (2014) New North American species of Gymnopus. North American Fungi 9: 1-22. https://doi.org/10.2509/naf2014.009.003
  • Petersen, R.H. & Hughes, K.W. (2017) An investigation on Mycetinis (Euagarics, Basidiomycota). MycoKeys 24: 1-139. https://doi.org/10.3897/mycokeys.24.12846
  • Petersen, R.H. & Hughes, K.W. (2021) Collybiopsis and its type species, Co. ramealis. Mycotaxon 136: 263-349. https://doi.org/10.5248/136.263
  • Razaq, A., Ilyas, S. & Khalid, A.N. (2020) Molecular systematics and evolutionary relationships of some inland gilled basidiomycetes from the Himalayan moist temperate forests of Pakistan based on rDNA marker. Pakistan Journal of Botany 52: 1055-1063. https://doi.org/10.30848/PJB2020-3(3)
  • Retnowati, A. (2018) The species of Marasmiellus (Agaricales: Omphalotaceae) from Java and Bali. Gardens '. Bull, Singapore 70: 191-258. https://doi.org/10.26492/gbs70(1).2018-17
  • Ronquist, F. & Huelsenbeck, J.P. (2003) MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19: 1572- 1574. https://doi.org/10.1093/bioinformatics/btg180
  • Singer, R. (1973) The genera Marasmiellus, Crepidotus and Simocybe in the neotropics. Beiheftze zur Nova Hedwigia 44: 1-517. https://doi.org/10.2307/3758379
  • Singer, R. (1974) A monograph of Favolaschia. Nova Hedwigia 50: 1-108.
  • Stamatakis, A. (2006) RAxML-VI-HPC: Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22: 2688-2690. https://doi.org/10.1093/bioinformatics/btl446
  • Vilgalys, R. & Hester, M. (1990) Rapid genetic identification and mapping of enzymatically amplified ribosomal DNA from several Cryptococcus species. Journal of Bacteriology 172: 4238-4246. https://doi.org/10.1128/jb.172.8.4238-4246.1990
  • White, T.J., Bruns, T., Lee, S. & Taylor, J. (1990) Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis, M.A., Gelfand, D.H., Sninsky, J.J. & White, T.J. (eds.) PCR Protocols: A Guide to Methods and Applications. New York, NY: Academic Press, pp. 315-322. https://doi.org/10.1016/B978-0-12-372180-8.50042-1
  • Wilson, A.W. & Desjardin, D.E. (2005) Phylogenetic relationships in the gymnopoid and marasmioid fungi (Basidiomycota, euagarics clade). Mycologia 97: 667-679. https://doi.org/10.1080/15572536.2006.11832797