Published January 9, 2023 | Version 0.0
Dataset Open

TreeAlign Input and Output datasets (initial submission)

Authors/Creators

  • 1. Memorial Sloan Kettering Cancer Center

Description

This repository provides the processed data necessary to reproduce the results for the initial TreeAlign paper submission. 

This includes the following:

  • Single cell whole genome sequencing (scDNA)
    • Copy number profiles
    • B allele frequency profiles
    • phylogenetic trees computed with HDBSCAN
    • benchmarking results vs other methods
  • 10X single cell RNA sequencing (scRNA)
    • count matrices
    • reference and total read counts at heterozygous SNPs
    • meta data
  • TreeAlign output
    • Clone assignment for expression profiles
    • p(k) scores
    • p(a) scores

Files

Files (452.7 MB)

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