Published April 25, 2025 | Version v1.16.0
Software Open

CogStack/MedCAT: v1.16.0 pre-release

Authors/Creators

  • 1. King's College London
  • 2. Research & Data Technology, UMC Utrecht
  • 3. UCL
  • 4. UMC Utrecht
  • 5. @scverse @laminlabs @theislab
  • 6. University Medical Center Utrecht
  • 7. University College London, Institute of Health Informatics

Description

Minor release v1.16.0. Adds python 3.12 support. Adds relation extraction updates (including usage of Llama models) And a few other changes here and there.

What's Changed

  • CU-8693bc9kc: Add python 3.12 support by @mart-r in https://github.com/CogStack/MedCAT/pull/511
  • CU-8697c86rf: Update docs build requirements by @mart-r in https://github.com/CogStack/MedCAT/pull/514
  • CU-8697x7y9x: Fix issue with transformers 4.47+ affecting DeID by @mart-r in https://github.com/CogStack/MedCAT/pull/517
  • Updates for MetaCAT by @shubham-s-agarwal in https://github.com/CogStack/MedCAT/pull/515
  • Support expansion of transformers ner models to include new concepts by @baixiac in https://github.com/CogStack/MedCAT/pull/519
  • CU-869805t7e alt names fixes by @mart-r in https://github.com/CogStack/MedCAT/pull/520
  • CU-8697qfvzz train metacat on sup train by @mart-r in https://github.com/CogStack/MedCAT/pull/516
  • CU-8698ek477: Fix AdamW import from tranformers to torch by @mart-r in https://github.com/CogStack/MedCAT/pull/523
  • CU-8698f8fgc: Fix negative sampling including indices for words without a vector by @mart-r in https://github.com/CogStack/MedCAT/pull/524
  • CU-8698gkrqa: Add argument to allow specifying the changes warrenting a model save by @mart-r in https://github.com/CogStack/MedCAT/pull/525
  • CU-8698gqumv: Fix regression test vocab vector sizes by @mart-r in https://github.com/CogStack/MedCAT/pull/526
  • CU-86983ruw9 Fix test train split by @mart-r in https://github.com/CogStack/MedCAT/pull/521
  • CU-8698hfkch: Add eval method to deid model by @tomolopolis in https://github.com/CogStack/MedCAT/pull/527
  • ignore_extra_labels on DeID Model Train / Eval by @tomolopolis in https://github.com/CogStack/MedCAT/pull/529
  • CU-8698mqu96 Transformers update (4.51.0) fix by @mart-r in https://github.com/CogStack/MedCAT/pull/531
  • Relation extraction llama by @vladd-bit in https://github.com/CogStack/MedCAT/pull/522
  • CU-8698vewzp: Fix docs requirements (hopefully) by @mart-r in https://github.com/CogStack/MedCAT/pull/534
  • CU-8698veb6y: Use Ubuntu 24.04 for publishing to test PyPI by @mart-r in https://github.com/CogStack/MedCAT/pull/533

Full Changelog: https://github.com/CogStack/MedCAT/compare/v1.15.2...v1.16.0

Files

CogStack/MedCAT-v1.16.0.zip

Files (11.1 MB)

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md5:8e6fe48cc35460b87b630e7c96ce84e0
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Additional details

Related works

Is supplement to
Software: https://github.com/CogStack/MedCAT/tree/v1.16.0 (URL)

Software

Repository URL
https://github.com/CogStack/MedCAT