Published November 16, 2021 | Version v1
Dataset Open

AGORA dataset

Authors/Creators

  • 1. Wellcome Sanger Institute
  • 2. Institut de Biologie de l'École Normale Supérieure (IBENS)

Description

This repository contains all the data used in the AGORA publication related to https://github.com/DyogenIBENS/Agora software

  • Deschrambler_comparison_data.tgz contains the DESCHRAMBLER Boreoeutheria reconstructed genome formatted for comparison against the AGORA genome.

  • Reconstructions.tgz contains all data from Vertebrate_V92, Vertebrate_V102 and Plants_V41 reconstructions described in the article for statistics and/or analyses.

  • Simulations.tgz contains all simulations and ancestral reconstruction data for comparison between AGORA and DESCHRAMBLER algorithms. (Kim et al 2017 simulations, and MagSimus simulations).

  • data92_withoutLowContiguity_descendants.tgz contains both Amniota and Boreoeutheria ancestral reconstructions without low-contiguity descendant genomes

  • OMA_Boreoeutheria_Reconstruction.tgz contains Boreoeutheria ancestral genes and ancestral genome infered from OMA Hierarchical Orthogroups and the list of equivalent orthogroups with data92 based on common descendant human genes.

 

contact :

  • Email agora {at} bio {dot} ens {dot} psl {dot} eu

Files

Files (1.5 GB)

Name Size Download all
md5:d28468e1511b3aa23769e21c40248bbb
8.3 MB Download
md5:9c4df7d85c9fcb8aa9d5c2e790d3e2fd
109.6 kB Download
md5:23eab5867fd4a4afda69b39953cbec43
7.3 MB Download
md5:a430b07a345710c1521aa2359fa915fb
1.1 GB Download
md5:32ed4aac50722bee3da33240e75f4855
349.8 MB Download

Additional details

Related works

Is supplemented by
Software: https://github.com/DyogenIBENS/Agora (URL)