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Published December 21, 2022 | Version v2.1.33.15
Software Open

broadinstitute/viral-pipelines: v2.1.33.15

Authors/Creators

  • 1. Broad Institute
  • 2. Broad Institute of MIT and Harvard
  • 3. MIT
  • 4. Merck
  • 5. @broadinstitute
  • 6. DynoTx
  • 7. Aalborg University
  • 8. Contractor at The Broad Institute
  • 9. @gitlabhq

Description

What's Changed new and changed workflows
  • Add workflow for QIIME2 classification of 16S reads by @golu099 in #439
  • simplify augur_from_assemblies workflow by @dpark01 in #440
  • denovo assembly SPAdes updates by @dpark01 in #441
  • genbank prep and assemble_denovo updates by @dpark01 in #443
  • add new workflow nextclade_single by @dpark01 in #444
  • update classify_single to accept multiple bams by @dpark01 in #447
smaller docker, VM, and mechanical updates
  • more disk for nextstrain; dockstore API fix by @dpark01 in #437
  • Make Pipelines Azure compatible Closes #143 by @vsmalladi in #438
  • set default GPU to K80->P4 in BEAST task; parameterize beagle_order by @tomkinsc in #442
  • pangolin 4.1.3 / pdata 1.17 by @dpark01 in #445
New Contributors
  • @vsmalladi made their first contribution in #438
  • @golu099 made their first contribution in #439

Full Changelog: https://github.com/broadinstitute/viral-pipelines/compare/v2.1.33.14...v2.1.33.15

Files

broadinstitute/viral-pipelines-v2.1.33.15.zip

Files (19.9 MB)

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Additional details

Related works

Is supplement to
https://github.com/broadinstitute/viral-pipelines/tree/v2.1.33.15 (URL)