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Published October 20, 2022 | Version 1.3.1
Software Open

TIAToolbox as an end-to-end library for advanced tissue image analytics

Authors/Creators

Description

Major Updates and Feature Improvements
  • Adds NuClick architecture #449
  • Adds Annotation Store Reader #476
  • Adds DFBR method for registering pair of images #510
Changes to API
  • Adds a sample SVS loading function tiatoolbox.data.small_svs() to the data module #517
Bug Fixes and Other Changes
  • Simplifies example notebook for image reading for better readability
  • Restricts Shapely version to \<2.0.0 for compatibility
Development related changes
  • Adds GitHub workflow for automatic generation of docker image
  • Updates dependencies
  • Updates bump2version config
  • Enables flake8 E800 checks for commented codes.
  • Fixes several errors generated by DeepSource.
  • Prevent test dumping file to root
  • Removes duplicate functions to generate parameterized test scenarios

Note: Please note that Python 3.7 support will be removed after this release. We plan to add support for Python 3.11 in the next release.

Notes

If you use this software, please cite it as below.

Files

TissueImageAnalytics/tiatoolbox-v1.3.1.zip

Files (62.4 MB)

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md5:fc83c4655602d70c265ff21e87471ebd
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Additional details

Related works

Is supplement to
https://github.com/TissueImageAnalytics/tiatoolbox/tree/v1.3.1 (URL)