rrwick/Assembly-Dereplicator: Assembly Dereplicator v0.3.0

This version changes the dereplication algorithm. Instead of a using single-linkage clustering, it now progressively removes one assembly from the closest pair until the target dereplication is complete. This allows for dereplication to either a distance threshold or a defined number of genomes. See the README for more info.

If you'd like to use the old single-linkage clustering approach, that's in the last release: v0.1.1.