The nf-core framework for community-curated bioinformatics pipelines.

Published May 16, 2022 | Version 2.4.1

Software Open

nf-core/ampliseq version 2.4.1 - 2022-12-07 Summary of changes

Most importantly this release fixes a bug in 2.4.0 that prevented the use of the SILVA v138 database with QIIME2.

Detailed changes Added

#494 - --metadata_category_barplot accepts a comma separated list of metadata categories and plots for each barplots with average relative abundance.

Changed

Fixed

#486 - Fixed typo in error message stating --skip_classifer instead of --classifier.
#487,#488 - Update stale links in usage documentation.
#489 - Reduce linting warnings for nf-core tools version 2.5.1.
#491 - Make output from --addSH match UNITE format by replacing spaces with underscores.
#495 - Template update for nf-core/tools version 2.6
#501 - Check for empty fields in samplesheet column "run" and raise an appropriate error.
#503 - Changed environment for formatting databases.
#504 - Fixed warnings with nextflow 22.10 (and later) about processes that are defined more than once.

Dependencies

Tool	Previous version	New version
QIIME2	2021.8	2022.8

Notes

If you use `nf-core tools` in your work, please cite the `nf-core` publication

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nf-core/ampliseq-2.4.1.zip md5:91c7ce477769ea0e329e75925f1fe716	3.5 MB	Preview Download