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Published December 6, 2022 | Version 2.9.0
Software Open

nextstrain/nextclade: 2.9.0

Authors/Creators

  • 1. Biozentrum, University of Basel
  • 2. @neherlab @nextstrain
  • 3. @nextstrain
  • 4. @Snyk
  • 5. University of North Carolina
  • 6. University of Freiburg
  • 7. ETH Zurich @cevo-public
  • 8. Oklahoma Medical Research Foundation
  • 9. Faculty of Computer Science, Dalhousie University
  • 10. The Francis Crick Institute
  • 11. Iowa State University | USDA-ARS | Fred Hutch

Description

Nextclade Web 2.9.0, Nextclade CLI 2.9.0 (2022-12-06) Increase requirements for supported Linux distributions for GNU flavor of Nextclade CLI

Due to malfunction of package repositories of Debian 7, we had to switch automated builds of the "gnu" flavor of Nextclade CLI from Debian 7 to CentOS 7. This increases minimum required version of glibc to 2.17. The list or Linux distributions we tested the new version of Nextclade on is here. For users of older Linux distributions (with glibc < 2.17) we suggest to use "musl" flavor of Nextclade CLI, which does not depend on glibc, but might be substantially slower. Users of Nextclade CLI on macOS and Windows and users of Nextclade Web are not affected.

Add gene length validation in GFF3 parser

Nextclade will now check if genes have length divisible by 3 in gene maps and will fail with an error if it's not the case.

Fix translated (internationalized) strings in Nextclade Web

We fixed missing spaces between words in some of the languages and fixes some of the translations.

Internal changes
  • build Linux binaries on CentOS 7
  • migrate CI to GitHub Actions
  • upgrade Rust to 1.65.0

<details> <summary><h3>Commit history</h3> (click to expand)</summary>

</details> Instructions

📥 Nextclade CLI & Nextalign CLI can be downloaded from the links in the "Assets" section just below. There click "Show all" to show more options. Note the difference between "nextalign" and "nextclade" files.

🌐 Nextclade Web is available at https://clades.nextstrain.org

🐋 Docker images are available at DockerHub

📚 To understand how it all works, make sure to read the Documentation

Files

nextstrain/nextclade-2.9.0.zip

Files (9.8 MB)

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md5:544e19002a0693a6676a254820d7aca4
9.8 MB Preview Download

Additional details

Related works

Is supplement to
https://github.com/nextstrain/nextclade/tree/2.9.0 (URL)