Published December 5, 2022 | Version 1.7.7.0
Software Open

Kinggerm/GetOrganelle: GetOrganelle v1.7.7.0

Authors/Creators

  • 1. E3B, Columbia University
  • 2. Xishuangbanna Tropical Botanical Garden, Chinese Academy of Sciences

Description

  1. Assembly.merge_all_possible_nodes: fix a bug which will result in bad contig names
  2. add Utilities/get_annotated_regions_from_gb.py (#197 )
  3. fix a bug in seq_parser.SequenceList.remove
  4. Utilities/slim_graph.py: --percent and --blast-options added; exception catch
  5. fix a bug in get_organelle_config.py:pipe_control_func.py:SEED_DB_HASH (#199 )
  6. print slim_graph.py error (in from_assembly) and blastn error
  7. fix a bug in slim_graph.py (#196 )
  8. update Assembly improvement in gfa/fastg parser/writer: storing other attributes if unknown; output unequal overlaps

Files

Kinggerm/GetOrganelle-1.7.7.0.zip

Files (228.3 kB)

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Additional details

Related works

Is supplement to
https://github.com/Kinggerm/GetOrganelle/tree/1.7.7.0 (URL)