Published November 30, 2022
| Version 1.0.0
Dataset
Open
16S rRNA sequencing gene datasets for CRC data
Creators
- 1. Computational Biology Group, Precision Nutrition and Cancer Research Program, IMDEA Food Institute, Madrid, Spain.
Description
Used datasets:
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Data processing & sharing
All datasets were processed using qiime2 pipeline with DADA2 for Sequence quality control and feature table construction and SILVA database for taxonomic assignment, and then a phyloseq object was constructed.
- Abundance table at genus level is in file genus.csv (Sample counts with NO filtering).
- Clean metadata is in metadata.csv file (Countries: CA - Canada. USA - United States of America. FRA - France.)
- Phyloseq object is in file physeq.RDS (Saved as an RDS object in R)
More information is here.