Published November 29, 2022 | Version 1.2.1
Software Open

phasik

Authors/Creators

  • 1. CENTAI
  • 2. Freie Universität Berlin
  • 3. University of Oxford

Description

The Phasik package was created to infer temporal phases in temporal networks. It contains various utility classes and functions that can be divided into two main parts:

  1. Build, analyse, and visualise temporal networks from time series data.
  2. Infer temporal phases by clustering the snapshots of the temporal network.

Phasik was initially created for the analysis presented in the paper "Inferring cell cycle phases from a partially temporal network of protein interactions" by Lucas, M., Morris, A., Townsend-Teague, A., Tichit, L., Habermann, B. H., & Barrat, A. (2021), bioRxiv.

In addition to the package, this repository contains the notebooks necessary to reproduce the analysis of the paper.

 

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