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Published November 29, 2022 | Version 1.9.0
Software Open

ms609/TreeTools: v1.9.0

Authors/Creators

  • 1. Department of Earth Sciences, Durham University
  • 2. @actions
  • 3. @posit-pbc

Description

New methods and functions

  • ZeroTaxonTree() creates a phylo object with no leaves.

  • DropTip() gains new methods DropTip.list() and DropTip.NULL().

  • as.matrix.phylo() converts a tree to a matrix representation, allowing a tree to be passed as a constraint to ImposeConstraint().

  • as.matrix.Splits() and as.matrix.phyDat() methods added as synonyms to as.logical.Splits() and PhyDatToMatrix().

Improvements

  • Handle TipLabels(0) and BalancedTree(0).

  • Support zero-leaf trees in as.Splits() and duplicated.Splits().

  • Support non-identical tip labels in as.Splits().

  • Try Latin-1 encoding if ReadCharacters() family fail under UTF-8.

Files

ms609/TreeTools-1.9.0.zip

Files (997.5 kB)

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md5:6c800228f823bfe15cc728d3f22873d4
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Additional details

Related works

Is supplement to
https://github.com/ms609/TreeTools/tree/1.9.0 (URL)