cdmuir/photosynthesis: v2.1.1

Published November 19, 2022 | Version v2.1.1

Software Open

Added Bayesian options to fit light-response and light respiration models via fit_photosynthesis(..., .method = "brms")
Preferred method for fitting data to models is fit_photosynthesis() which performs all checks and manipulations prior to passing arguments to various fit_ functions.
Deprecated fit_r_light_kok(), fit_r_light_WalkerOrt(), fit_r_light_yin() in favor of fit_r_light2(). The new function uses non-standard evaluation to replace variable names as in dplyr::rename(). It will also extend functionality to enable Bayesian fitting using brms and does not output a plot.
Added Bayesian fitting method to fit_aq_response2() using brms package.
Deprecated fit_aq_response() in favor of fit_aq_response2(). The new function uses non-standard evaluation to replace variable names as in dplyr::rename(). It will also extend functionality to enable Bayesian fitting using brms and does not output a plot.
Fixed bug with setting upper bound for search in find_A()
Addressed warnings about deprecated arguments in tidyselect and ggplot2
Added C_i (intercellular CO2 concentration) to output from photo() and photosynthesis()

Files

Name	Size	Download all
cdmuir/photosynthesis-v2.1.1.zip md5:05e7cd5a1f5165ead5fe763f5175ff89	5.2 MB	Preview Download

Is supplement to: https://github.com/cdmuir/photosynthesis/tree/v2.1.1 (URL)