Published November 15, 2022
| Version v2
Dataset
Open
Kaiso-meDNA systems
Authors/Creators
- 1. Central Department of Physics, Tribhuvan University, Kirtipur, Kathmandu, Nepal
- 2. Department of Oncology, Georgetown University, Washington, D.C. 20057, USA
- 3. Department of Physics, Florida International University, Miami, FL 33199, USA
Description
This list contains the pdb, psf and dcd files of 7 different systems. The MeCG2, MeCG2_mutCG, MeECad, MeECad_mod and MeECad_mod_mutTA systems have three replica runs of length 600 ns or 400ns. The MeCG2_E535A and MeECad_mod_mutTA systems each have a single run of 200 ns. Note: sequences with a C/G pair in the 5'-flanking site: MeCG2_mutCG, MeECad, MeECad_mod; Sequences with a T/A pair in the 5'-flanking site: MeCG, MeECad_mod_mutTA.
The trajectories uploaded here are saved at 1 ns/frame (i.e. 600 frames = 600 ns). The systems are pbc-wrapped and aligned for protein. Trajectories that are not pbc-wrapped and saved more frequently at 0.2 ns/frame (i.e. 5x as many frames) are available upon request.
To load the trajectories in VMD:
mol new 01_MeCG2.psf
mol addfile 01_MeCG2_run1.dcd waitfor all
Files
Files
(5.8 GB)
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md5:bbdd3a9c8d423e8bb2bb4e85f566b1e1
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md5:8f498aeee877fc82b1431fe6f49bca55
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294.5 MB | Download |
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md5:eaacfad38441c63475c37ea4c90ea07a
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8.6 MB | Download |