Published November 9, 2022
| Version v1
Software
Open
scFASTCORMICS: A contextualization algorithm to reconstruct metabolic multi-cell population models from single-cell RNAseq data
Authors/Creators
- 1. University of Luxembourg
Description
scFASTCORMICS code. Running requires the installation of rFASTCORMICS (https://github.com/sysbiolux/rFASTCORMICS), the cobra toolbox (https://opencobra.github.io/cobratoolbox/stable/), IBM cplex(https://www.ibm.com/analytics/cplex-optimizer) and matlab (https://nl.mathworks.com/products/matlab.html).
Please see the paper: scFASTCORMICS: A contextualization algorithm to reconstruct metabolic multi-cell population models from single-cell RNAseq data
The links to the data are indicated in the paper.
Check out the GitHub repo for new versions: https://github.com/sysbiolux
Files
dico_biodbnet.txt
Files
(1.7 MB)
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