Published May 16, 2022
| Version 2.4.1
Software
Open
The nf-core framework for community-curated bioinformatics pipelines.
Description
Pipeline Updates
Major pipeline rewrite to use DSL2 with shared nf-core/modules.
Warning: Breaking change! ⚠️
The pipeline now requires a sample sheet to be passed to the pipeline with --input:
| sample | fastq_1 | fastq_2 | genome |
|---|---|---|---|
See an example here
Note: The
genomecolumn is not yet used but will give the ability to map to multiple genomes in a single run in a future release. See #181.
Supplying the reference geneome with --genome as before works as usual.
Major updates in commands and software versions for nearly every tool.
Please treat this new version with a little more care than usual and let us know if you find any problems!
Notes
If you use `nf-core tools` in your work, please cite the `nf-core` publication
Files
nf-core/methylseq-2.0.0.zip
Files
(4.0 MB)
| Name | Size | Download all |
|---|---|---|
|
md5:4c504b6ad66d8345d0a9d7f3e6934baa
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4.0 MB | Preview Download |
Additional details
Related works
- Is supplement to
- https://github.com/nf-core/methylseq/tree/2.0.0 (URL)