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Published November 8, 2022 | Version v2.1.0
Software Open

cdmuir/photosynthesis: photosynthesis 2.1.0

Authors/Creators

  • 1. University of Hawai'i

Description

  • Commented out examples that took a long time to run
  • Added progress option to fit_many() to toggle progress bar
  • We removed large files from help subdirectory
  • Divided large vignette into smaller vignettes and removed figures to reduce file size
  • Updated CITATION
  • There is a new vignette on C3 photosynthesis modeling recommendations (modeling-recommendations)
  • Under the hood, many changes to photosynthesis(), but performance should be the same
  • Changed default C_air from 41 Pa to 420 umol/mol
  • Changed default O from 21.27565 kPa to 0.21 mol/mol
  • Added optional feature to calculate mesophyll conductance to CO2 (g_mc) as sum of internal airspace (g_iasc) and liquid-phase (g_liqc) conductances.
  • To avoid redundancy, photo_parameters is single source of truth for all input parameters to photo() and photosynthesis().
  • Fixed error in gc2gw() and gw2gc() and migrated to gunit version 1.0.2. Legacy version used version for still air in boundary layer conductance conversions. The corrected version includes modification for laminar flow in the boundary layer. Legacy version can be obtained with option use_legacy_version = TRUE.
  • Changed default conductance units from [umol / m ^ 2 / s / Pa] to [mol / m ^ 2 / s]
  • Changed <- to = in many instances
  • Changed %>% to |> in many instances

Files

cdmuir/photosynthesis-v2.1.0.zip

Files (4.9 MB)

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Additional details

Related works

Is supplement to
https://github.com/cdmuir/photosynthesis/tree/v2.1.0 (URL)