There is a newer version of the record available.

Published May 16, 2022 | Version 2.4.1
Software Open

The nf-core framework for community-curated bioinformatics pipelines.

Authors/Creators

Description

[1.8] - 2022-11-08 Enhancements & fixes
  • #111 - Change input mimetype to csv
  • #114 - Final samplesheet is not created when --skip_fastq_download is provided
  • #118 - Allow input pattern validation for csv/tsv/txt
  • #119 - --force_sratools_download results in different fastq names compared to FTP download
  • #121 - Add tower.yml to render samplesheet as Report in Tower
  • Fetch SRR and DRR metadata from ENA API instead of NCBI API to bypass frequent breaking changes
  • Updated pipeline template to nf-core/tools 2.6

Notes

If you use `nf-core tools` in your work, please cite the `nf-core` publication

Files

nf-core/fetchngs-1.8.zip

Files (2.3 MB)

Name Size Download all
md5:6c86d11ab9bac8628c590bc45e0a797e
2.3 MB Preview Download

Additional details

Related works

Is supplement to
https://github.com/nf-core/fetchngs/tree/1.8 (URL)