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Published October 24, 2022 | Version v0.4.14
Software Open

PartSeg - segmentation and reconstruction tool for 3D microscopy images

Authors/Creators

  • 1. Centre of New Technologies, University of Warsaw, Warsaw, Poland; Institute of Informatics, University of Warsaw, Warsaw, Poland
  • 2. Nencki Institute of Experimental Biology, Polish Academy of Sciences, Warsaw, Poland
  • 3. Institute of Informatics, University of Warsaw, Warsaw, Poland

Contributors

  • 1. Centre of New Technologies, University of Warsaw, Warsaw, Poland; Faculty of Mathematics and Information Science, Warsaw University of Technology, Warsaw, Poland

Description

0.14.4 - 2022-10-24 Bug Fixes
  • Fix get_theme calls to prepare for napari 0.4.17 (#729)
  • Fix sentry tests (#742)
  • Fix reporting error in load settings from the drive (#725)
  • Fix saving pipeline from GUI (#756)
  • Fix profile export/import dialogs (#761)
  • Enable the "Compare" button if ROI is available (#765)
  • Fix bug in cut with ROI to not make black artifacts (#767)
Features
  • Load alternatives labeling when opening PartSeg projects in napari (#731)
  • Add option to toggle scale bar (#733)
  • Allow customizing the settings directory using the PARTSEG_SETTINGS_DIR environment variable (#751)
  • Separate recent algorithms from general application settings (#752)
  • Add multiple otsu as threshold method with selection range of components (#710)
  • Add function to load components from Mask Segmentation with a background in ROI Analysis (#768)
Miscellaneous Tasks
  • Prepare pyinstaller configuration for napari 0.4.17 (#748)
  • Add ruff linter (#754)
Testing
  • Add new build and inspect wheel action (#747)
Build
  • Bump actions/checkout from 2 to 3 (#716)
  • Bump actions/download-artifact from 1 to 3 (#709)
Changes:
  • 9e742fcb8ba1602c1002050793253214da0b16f7 Prepare 0.14.4 release (#770)
  • a1f8bba49506b72207f0fbb15b97581decb72e0a feat: Add function to load components from Mask Segmentaion with background in ROI Analysis (#768)
  • 9986dc4cbba7b28e13a4475b648f588a9f45720f fix: Fix bug in cut with roi to do not make black artifacts (#767)
  • 53ec234f927e2ccb14ec6d5833f29cbfd5cd1c2b fix: Enable compare button if ROI is avaliable (#765)
  • fceb043cd1574d143e62690b21024ed4b54c520a fix: Fix profile export/import dialogs (#761)
  • 214320ee015e4d5a533649325570c9773fdfd643 [pre-commit.ci] pre-commit autoupdate (#760)
  • 7f5929694808726e06e92ce6a94fcf93f40cce10 Report if in main thread when auto report errors is enabled
  • 23f8ce48b9891dd28781eebb1474a40e9a7d9d52 fix: Fix saving pipeline from GUI (#756)
  • a40de4e910ca433642be360b4bdeb27386475bf5 chore: Add ruff linter (#754)

  • cb16b0e5cd0f7fca08ec8f5e87cdad5241ce74ab feat: Add multiple otsu as threshold method with selection range of components (#710) <details><summary><b>See More</b></summary>

  • 54958d124ee0c2a8725758c1f938d65624bcaa26 feat: Separate recent algorithms from general application settings (#752)

  • ef43db37b2cf76876648a5514edaf8f66a95891b bugfix: Fix reporting error in load settings from drive (#725)
  • eab244f198f0470ace3f6c91b57a1da49bbdda19 feat: Allow customize settings directory using the PARTSEG_SETTINGS_DIR environment variable (#751)
  • fd6e600d0f5aa06637b187f71f7816dd731addd9 chore: Prepare pyinstaller configuration for napari 0.4.17 (#748)
  • ce084a34f8970d3ead1d025608b10b05edb077e9 test: Add new build and inspect wheel action (#747)
  • 6b6dbdd777187db92d73bc8ba8e57b9ac69cdf8b [pre-commit.ci] pre-commit autoupdate (#737)
  • 99aaaecb40a61482d7981e4d57c761c8999ba735 Ignore error when locale.setlocale fails with locale.Error (#743)
  • 609c5428f749edbd4886e3de06c1a2883a12550f bugfix: fix sentry tests (#742)
  • de58c31992627c20860ae5ba534664e4e30081cb build(deps): bump actions/download-artifact from 1 to 3 (#709)
  • 531e0f68238de4911e1a041be96efd792775e6de feat: Add option to toggle scale bar (#733)
  • 5e765dfd62cf650b12257d5d69c3e8fffb6155ae feat: Load alternatives labeling when open PartSeg projects in napari (#731)
  • 87dab175a0ccf98f2d577495d036463ab5a89c85 fix: Fix get_theme calls to prepare for napari 0.4.17 (#729)
  • a8697a275eca510f95de42946901771bf60b687c Bump bundle requirements (#728)
  • 43f27ca74b9e0f4401bdaf8c20cb400261dc507f [pre-commit.ci] pre-commit autoupdate (#721)
  • 3d5695f5f15255b121bbc9a6b18eef25eba230b3 Increase max value in SearchLabel widget (#715)
  • 50c69e497d788cfff4c81a8eccbcb0aeaa986891 [pre-commit.ci] pre-commit autoupdate (#718)
  • 0e99126b8735fe2e17a88302b99aa86e55385f00 Bump packages versions for bundle (#717)
  • da129c9bef5e5f236b03fc0ff191797f702d3e48 build(deps): bump actions/checkout from 2 to 3 (#716)
  • 100240992befab3d4f7abcaa3702e9746d4b7c3d Fix for napari repo, prepare for napari 0.4.17 (#712)
  • 396165398e464a5d3ac07926f7b479ed0d498a73 [pre-commit.ci] pre-commit autoupdate (#700)
  • 7bb4826b995c2a45f770a1c916b5d2c67cbb26ad Add missing requirements to setup.cfg (#696)
  • 08696b8074b8bdeaa577323d2723bd4621a8330e fix typos

This list of changes was auto generated.</details>

Files

4DNucleome/PartSeg-v0.4.14.zip

Files (7.3 MB)

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Additional details

Related works

Is supplement to
https://github.com/4DNucleome/PartSeg/tree/v0.4.14 (URL)