Published October 23, 2022
| Version 0.0.1
Dataset
Open
orthomap - example data
Description
Example data for python package orthomap.
Includes OrthoFinder results for all translated coding sequences (CDS) from Ensembl release-105 (keeping only longest isoforms):
- <ensembl_105_orthofinder_Orthogroups.GeneCount.tsv.zip>
- <ensembl_105_orthofinder_Orthogroups.zip.tsv>
Includes a table specifying the OrthoFinder species file names and its corresponding NCBI taxonomic IDs:
- <ensembl_105_orthofinder_species_list.tsv>
Includes NCBI taxonomic tree for Ensembl release-105 species analysed:
- <ensembl_105_species_tree_ncbi_topology_named.nw>
- <ensembl_105_species_tree_ncbi_topology_named.pdf>
Files
ensembl_105_orthofinder_Orthogroups.GeneCount.tsv.zip
Files
(38.0 MB)
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Additional details
References
- Emms, D.M. and Kelly, S., 2019. OrthoFinder: phylogenetic orthology inference for comparative genomics. Genome biology, 20(1), pp.1-14.