There is a newer version of the record available.

Published October 17, 2022 | Version v0.14.0
Software Open

zqfang/GSEApy: gseapy-v0.14.0

Authors/Creators

  • 1. Harvard Medical School
  • 2. Lamin Labs
  • 3. @NewLimitBio
  • 4. Human Longevity, Inc.

Description

🚀 This version further improves the speed of calculation.

New features:

  • GSEA, ssGSEA speed up 10x than NumPy implementation (<=0.10.8)
  • add read_gmt function to parse gmt file.
  • add get_library function to download enrichr library and return a dict
  • add enrich function to make over-representation analysis less confusing when using enrichr
  • biomart API speedup: bioservices dependency is no longer needed.

Bug fixed

  • dotplot, ringplot now supports GSEA results

Files

zqfang/GSEApy-v0.14.0.zip

Files (5.4 MB)

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md5:fac51f102dd97c8a2c9c97487c44528c
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Additional details

Related works

Is supplement to
https://github.com/zqfang/GSEApy/tree/v0.14.0 (URL)