Published October 18, 2022
| Version v1
Software
Open
Data and code for: Mismatch Repair-Deficient strains of Pseudomonas aeruginosa reveal novel pathways of resistance to combinations of cephalosporin antibiotics and beta-lactamase inhibitors
Authors/Creators
- 1. Bacterial Pathogenesis and Antimicrobial Resistance Unit, LCIM, NIAID, NIH, Bethesda, Maryland, United States of America
- 2. 1Bacterial Pathogenesis and Antimicrobial Resistance Unit, LCIM, NIAID, NIH, Bethesda, Maryland, United States of America
- 3. Dept. Laboratory Medicine, NIH Clinical Center, NIH, Bethesda, Maryland, United States of America
- 4. Department of Medicine, Case Western Reserve University School of Medicine, Cleveland, Ohio, United States of America
Description
This repository contains code and the data for reproducing results and figures in the associated manuscript: "Mismatch Repair-Deficient strains of Pseudomonas aeruginosa reveal novel pathways of resistance to combinations of cephalosporin antibiotics and beta-lactamase inhibitors".
1_GENOMIC
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Script and test data to process variant calling and variant annotation
2_RNASEQ
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Script and test data for transcriptomic analysis
3_CONSERVATION
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Script and data to generate gene conservation scores
4_FIGURES
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Script and data to generate figures from the paper.
Files
Dulanto_et_al_Pseudomonas.zip
Files
(58.9 MB)
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md5:85d132894adab41220a772931253d6f5
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