There is a newer version of the record available.

Published September 22, 2022 | Version v0.13.0
Software Open

shenwei356/taxonkit: TaxonKit v0.13.0

Authors/Creators

  • 1. Chongqing Medical University
  • 2. DOE Joint Genome Institute
  • 3. @imb-fmg

Description

Changes
  • TaxonKit v0.13.0
    • taxonkit reformat:
      • add a new placeholder {K} for rank kingdom. #64
      • do not panic for invalid TaxIds, e.g., the column name, when using -I--taxid-field.
    • taxonkit create-taxdump:
      • fix merged.dmp and delnodes.dmp. Thanks to @apcamargo ! gtdb-taxdump/issues/2.
      • fix bug of handling non-GTDB data when using -A/--field-accession and no rank names given: the colname of the accession column would be treated as one of the ranks, which messed up all the ranks.
      • fix the default option value of --field-accession-re which wrongly remove prefix like Sp_. #65
    • taxonkit list:
      • fix warning message of merged taxids. ### Please cite

Shen, W., Ren, H., TaxonKit: a practical and efficient NCBI Taxonomy toolkit, Journal of Genetics and Genomics, https://doi.org/10.1016/j.jgg.2021.03.006

Links

Tips

  • run taxonkit version to check update !!!
  • run taxonkit genautocomplete to update Bash completion !!!
OS Arch File, 中国镜像 Download Count
Linux 64-bit taxonkit_linux_amd64.tar.gz,<br/> 中国镜像
Linux arm64 taxonkit_linux_arm64.tar.gz,<br/> 中国镜像
macOS 64-bit taxonkit_darwin_amd64.tar.gz,<br/> 中国镜像
macOS arm64 taxonkit_darwin_arm64.tar.gz,<br/> 中国镜像
Windows 64-bit taxonkit_windows_amd64.exe.tar.gz,<br/> 中国镜像

Files

shenwei356/taxonkit-v0.13.0.zip

Files (1.6 MB)

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md5:c9b9a78a7cb1b38100e6e4c8bc9946f8
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Additional details

Related works

Is supplement to
https://github.com/shenwei356/taxonkit/tree/v0.13.0 (URL)