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Published August 18, 2022 | Version v2
Dataset Open

ICB Data TSV Files

  • 1. University Health Network

Description

ICB data objects extracted into TSV files.

Processed by using this script: https://github.com/bhklab/icb_data_exploration_and_analysis/blob/main/Code/rds_to_tsv.R.

Information about each data object is available at https://www.orcestra.ca/clinical_icb.

Each zip file contains

  1. patient metadata ICB_[Study]_metadata.tsv
  2. assay data ICB_[Study]_[Assay Name].tsv
  3. assay gene metadata ICB_[Study]_[Assay Name]_genes.tsv

The Assay Name can be "expr", "expr_gene_tpm", "expr_gene_counts", "expr_isoform_tpm", "expr_isoform_counts".

"expr" and "expr_gene_tpm" are gene expression data in TPM, which is present across all datasets.

Other assay data are present if raw gene expression data were available.

 

Files

ICB_Braun.zip

Files (740.7 MB)

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md5:58a69c07bbfde569e99450467725c794
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md5:0925458690db34e227b0e6542312604a
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