Host removal database: Homo sapiens, Sars-Cov-2, PhiX174

💾 cleanup-db

Kraken2 database, built upon a viral sequence masked human reference from:

• Handley, Scott A. (2020). Virus+ Sequence Masked Human Reference Genome (hg19) (1.0) [Data set]. Zenodo. [10.5281/zenodo.4116107]

but separating chromosomes as artificial taxa to allow for QC, and includes Sars-Cov-2 and PhiX 174

💾 gutcheck-db

A very small DB containg some common gut bacteria and Human and Murine mitochondrial genome:

• Akkermansia muciniphila
• Bacteroides fragilis
• Bifidobacterium longum
• Blautia obeum strain
• Escherichia coli
• Enterococcus faecium
• Prevotella copri

See: https://github.com/telatin/cleanup