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Published September 2, 2022 | Version v0.13.0
Software Open

zqfang/GSEApy: GSEApy-v0.13.0

Authors/Creators

  • 1. Harvard Medical School
  • 2. Lamin Labs
  • 3. @NewLimitBio
  • 4. Human Longevity, Inc.

Description

Fixed a critical bug in NES calculation in the Rust code. #162

And FDR values is affected in when NES < 0 for gseapy version (0.12.0, 0.12.1).

Please update at lease to v0.13.0 to get the correct FDR values.

minor

  • improve output files (sort by abs(NES) in decending order)
  • generate output gene signature file (gmt) used in calculation

Files

zqfang/GSEApy-v0.13.0.zip

Files (5.1 MB)

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Additional details

Related works

Is supplement to
https://github.com/zqfang/GSEApy/tree/v0.13.0 (URL)