ctboughter/AIMS: AIMS_0.9.1

Version 0.9 introduced a few new GUI bugs when using the feature to compare input datasets. This release (AIMS_0.9.1) fixes those bugs, and adds a few bootstrapping features for biophysical property visualizations.

The primary install path is still via PyPI. Users can simply install AIMS using:

pip install aims-immune

You can launch the GUI, CLI, or Notebook using simple command line arguments "aims-gui", "aims-notebook", or "aims-cli".

Known Issues for v0.9.1: -Relatively inflexible dependencies. Specifically a requirement for python3.9. If this is a big problem, please open an "issue". -The CLI is unable to call parallelization scripts. A patch will come soon to switch from python multiprocessing to numba, which should fix the problem. -The GUI is still lagging behind the notebook, unable to do statistics and bootstrapping, or handle peptide data -The "aims-notebook" command can only be run once per directory. After users should call the more standard "jupyter lab" command. This is hopefully a minor issue.

NOTE: Users should be quick to complain about bugs! Use the issues tab, please. I'm just one person, and it is very difficult to track down all of these bugs myself.