AMICI: High-Performance Sensitivity Analysis for Large Ordinary Differential Equation Models

Published August 26, 2022 | Version v0.12.0

Software Open

Features:

Support for event observables via the Python interface by @FFroehlich in https://github.com/AMICI-dev/AMICI/pull/1845
Treat non-estimated parameters as constants during SBML-PEtab import by @dweindl in https://github.com/AMICI-dev/AMICI/pull/1810
Updated SUNDIALS to v5.8.0 by @dweindl in https://github.com/AMICI-dev/AMICI/pull/1836
Option to extract common subexpressions by @dweindl in https://github.com/AMICI-dev/AMICI/pull/1852, https://github.com/AMICI-dev/AMICI/pull/1856
Parallelize matrix simplification by @dweindl in https://github.com/AMICI-dev/AMICI/pull/1778
Validate PEtab problems before attempting import by @dweindl in https://github.com/AMICI-dev/AMICI/pull/1842
Improved type annotations for the swig interface by @dweindl in https://github.com/AMICI-dev/AMICI/pull/1860

Fixes:

Fixed an issue with potentially infinite loops during conservation law processing by @FFroehlich in https://github.com/AMICI-dev/AMICI/pull/1833
Fixed potential deadlocks during parallel simplification by @dweindl in https://github.com/AMICI-dev/AMICI/pull/1844
Fix resetting ReturnData::numstepsB when re-using Solver by @dweindl in https://github.com/AMICI-dev/AMICI/pull/1841

And further contributions by @dilpath, @dweindl, @FFroehlich

Full Changelog: https://github.com/AMICI-dev/AMICI/compare/v0.11.32...v0.12.0

Notes

If you use this software, please cite both the article from preferred-citation and the software itself.

Name	Size	Download all
AMICI-dev/AMICI-v0.12.0.zip md5:8cb88a1e5c8d7481a26043c3df9c2d2c	6.9 MB	Preview Download