Published August 23, 2022
| Version 4.0.0
Software
Open
biobakery/MetaPhlAn: 4.0.0
Authors/Creators
- 1. University of Trento
- 2. Weill Cornell Medicine
- 3. Okinawa Institute of Science and Technology
- 4. INRA MetaGenoPolis
- 5. University of Freiburg
- 6. Edmund Mach Foundation
Description
MetaPhlAn 4 relies on ~5.1M unique clade-specific marker genes identified from ~1M microbial genomes (~236,600 references and 771,500 metagenomic assembled genomes) spanning 26,970 species-level genome bins (SGBs), 4,992 of them taxonomically unidentified at the species level.
What's new in version 4
- Adoption of the species-level genome bins system (SGBs)
- New MetaPhlAn marker genes extracted identified from ~1M microbial genomes
- Ability to profile 21,978 known (kSGBs) and 4,992 unknown (uSGBs) microbial species
- Better representation of, not only the human gut microbiome but also many other animal and ecological environments
- Estimation of metagenome composed by microbes not included in the database with parameter
--unclassified_estimation - Compatibility with MetaPhlAn 3 databases with parameter
--mpa3
Files
biobakery/MetaPhlAn-4.0.0.zip
Files
(928.5 kB)
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Additional details
Related works
- Is supplement to
- https://github.com/biobakery/MetaPhlAn/tree/4.0.0 (URL)